Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55325 1132 / 0 MAB2, GCT MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035973 [exp] 1507 / 0 AT1G55325 1843 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10035972 [exp] 370 / 7e-121 AT1G55325 313 / 5e-98 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G220800 [exp] 1326 / 0 AT1G55325 2185 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Potri.001G004200 [exp] 1318 / 0 AT1G55325 2185 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06333 [flax] [poplar] Med13_C Mediator complex subunit 13 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016683 pacid=23149066 polypeptide=Lus10016683 locus=Lus10016683.g ID=Lus10016683.BGIv1.0 annot-version=v1.0 ATGACGGACAATATCTCTAGCAGGTATGAAATAAAAAAGAAGGAATCTATACCAGTTCGAATAGCTGGTGATGTTGATGGGGGTGTGCTAGATGGTCACC TCAATGCACCTGTTGGTGTTTGGCGCACTGTGGGCGGCCCAAAACCTACAAGGTCTTCAAGTATCGAAATTAGTCCATCCTTGTCCCATCATTCACTCAG CGAGGAAGGAATGCTTTCTTATGGGCAAAGGCATCCGCTGCAGGAGCTTCTTGACAGCATGGTCTTACTTGTGCAACAAGCTACTTCTATCGTTGACCTG GCTCTAGATTCAGATTGTGGTGATGGTCCCTATGGTTGGCTTGCATTACAAGAACACTGGAGACGTGGTTTTTGTTGTGGTCCTTCTATGGTTCATGCAG GCTGTGGAGGAACCTTGTCTGCTTCACATTCCTTAGACATTGCTGGCACAGAGTTAGTAGATCCACTCTCTGCAGATATTCATGCGTCTTCTGTAAGTAG TTTACTGCATACTGAAATTAAAGCAGCCTTAAAGTCTGCATTTGGGAATTTGGATGGCCCACTGTCAGCTGCTGACTGGTGCACTGGCCGCAGCTTCTCT AGTGGTGGTTCAACTATATGTGATGGATCAGTAATTGATTCTACTCTAAGTGAAGCTAGAGATTGTTCTAGTTCTTTTTCTCTATCCATGGGAGAACCGA TGAGTCCAGCTCAATCTTCTGCTGGTGGATCATCTAGTCTTAGAGGTGCAGTGGATGGAACAAAGTTGGATGACACAGTGCAGATGCGACTAAACCAAGA TACTGAGATTGATCCGAGCTACAGGATAAGACCAACGCTCTATGTTCTTCCATCACCTTCTATACTTGTCGGGTACCAGGACGACTGGCTGAAGACTGCA CCAAGCTCATTACAACTTTGGGAAAAGGCTCCTTTTGAACCATATGCTTCTCCAAAACCAATTACATATTATGTTGTCTGCCCCGACATTGATTCCCTTA CATCTGCTGCTGCTGATTTTTTCCAACAGCTTGGAACTGTTTACGAAGCATGCAAGCTAGGGACACATTCACCTCAGAATTTGGGAAACCAGATGGAAAC CCAACGAGGAAAATATTTGTCTTCTGGGTTTGTGTTACTCGACTGCCCTCAGTCAATGAAGATAGAAAGCAGCAATGCGTCTCTCGTGGGGTCAATAAGC GACTACTTTCTTTCTCTCTCCAATGGTTGGGATTTGACCAGTTATCTGAAGTCTCTTTCCAAGTCTATTAAATCTTTGAAACTTGGTACAAGCTTGCCAG GACATCCAAAAGAAGGACATAGCAGTTCTTGTACGGTTATCTATGTGGTCTGTCCTTTCCCAGAACCTACTGCGGTTTTACAAACTGTAGTTGAATCTTG TGTTGCTCTGGGATCAGTTGCTCTCCCATCAGATAGAGATAGGAGATCTATATTGCAGAATCAGATAGGCAAAGCATTAAGCTGCTTGATGGCAGTGGAT GAAGCATCAGCATCAAATGTTCTGGTACTTCCAGGGTTTAGTCTCCCAAAGTTGGTATTACAAGTTGTGACTGTGGATTCAATTTTTAAAGTTACTGGTC CAGCCCTGAATGAACTTATCATATTTAAGGAGACTGCATTTGCTGTCTTTAACAAGGCTCGCCGAATCACAAAAGGATCTTCATATAATATTCAGTCATC ATCGGTATCTGGCAGGTCTCATTCATCAACGACACCAGTGGTTTCAATTCCATCAATGTGGAAAGACTGCGTCGGCCCTCGAATGGGAGGCCCTCCCCAT CCTAGAGAGGGTGACATTGATGCTAGTTTGAGACCTGGGGCTTGGGATAACTCATGGCAGACTATAAGGGCTGGAGGTTTGAACTGTGATACAAGCAGAA ATGGAGATGTCTCAATTTTAGACGAAACACCCTACATGCTTGAACCACTTTTCATTCTTTCAGAACCTGGATCTCTAGAGCATGCTGTGGCACCTGCCTT GTACAATAATGCAACCACCGACTCTTCAAAAGTTATGTCTGATGATGGTAATGGGGGCCTCATGCAAAATACAAGCTCATCAGGAAGTGGGAATGCTAGT TCCAGCTCCCAACATGATGGATCTAGCTATCGGAAGGCTCTCCCTAGCCTCCACTGTTGCTATGGATGGACGGAGGATTGGCGATGGCTGGTATGCATAT GGACAGATGCAAGGGGAGAACTGCTGGACAGTCAAATATTTCCTTTTGGTGGAATTAGTAGTCGACAGGATACGAAAGGCTTGCAATGCCTTTTTGTGCA AGTCTTGCAGCAGGGATGTCAGTTACTTCAGGCTTGTTCGTCTCCTGATGTCACTGTGAAGCCTCGAGATTTTGTCATTTGTCGAATTGGGAATTTCTTT GAGCTTGAATACCTAGAGTGGCAAAAGGCCATTTATTCTGTTGGGGGAGCAGAGGTGAAGAAATGGCCTGTGCAGCTTCGACGTTCAATACCTGGAAGCT GCAACGGTTCATCATCCTTGCAGCAGCAGCAGGAGATAAGTTTGAGTCAAGAGAGAACATTACCTTCATCACCTAGTTCTCTGTACAGTCCTCATTCAAA GGCTTCTAATTTCATGAAAGGTGGTTTAGCACAACCTTCAGGCAGAAAGCAGCTCATGAGCGGGCACACAGCAGTTGATAGCACCAAGGGAATCCTCCAT CCGGTGAAGCCTCCGAGTTCAACCTCTGCGTCTTACCTTCTAATTCCGTCATCGAGCATGCGCTTCCTCCCTTCAAACCCACTTCAGCTTCCTACTTGCC TCACTGCAGAATCGCCACCGCTGGCTCATCTCCTCCACAGTAAGGGCTCTGCTATCCCCCTTTCAACCGGTTTTGTCATATCGAAAGCAGTGCCATCTGT GAGGAAAGACCTCAGAAGCAACTCTAGGGATGAGTGGCCTTCAGTGCTGTCGGTGAGTCTCATTGACTCGTACGGAGGAAATAGTAACATATCAACAGCA GACAAAATCGGTACTAGGAGTAATGAGACGGAGACCAACTTGATTCTTGGGACTGTGGCAGCTGAACTCCACGCCTTGTCATGGATGACAATCAGCCCAA CATATTTGGAGAGGCGTTCAGCACTGCCACTCCATTGTGACATGGTTTTGAGACTTAGAAGACTGCTTCATTTTGCAGATAAAGAGCTGTCTTCGCAACC AGATAAGGCATAG
AA sequence Show only first row Show all	>Lus10016683 pacid=23149066 polypeptide=Lus10016683 locus=Lus10016683.g ID=Lus10016683.BGIv1.0 annot-version=v1.0 MTDNISSRYEIKKKESIPVRIAGDVDGGVLDGHLNAPVGVWRTVGGPKPTRSSSIEISPSLSHHSLSEEGMLSYGQRHPLQELLDSMVLLVQQATSIVDL ALDSDCGDGPYGWLALQEHWRRGFCCGPSMVHAGCGGTLSASHSLDIAGTELVDPLSADIHASSVSSLLHTEIKAALKSAFGNLDGPLSAADWCTGRSFS SGGSTICDGSVIDSTLSEARDCSSSFSLSMGEPMSPAQSSAGGSSSLRGAVDGTKLDDTVQMRLNQDTEIDPSYRIRPTLYVLPSPSILVGYQDDWLKTA PSSLQLWEKAPFEPYASPKPITYYVVCPDIDSLTSAAADFFQQLGTVYEACKLGTHSPQNLGNQMETQRGKYLSSGFVLLDCPQSMKIESSNASLVGSIS DYFLSLSNGWDLTSYLKSLSKSIKSLKLGTSLPGHPKEGHSSSCTVIYVVCPFPEPTAVLQTVVESCVALGSVALPSDRDRRSILQNQIGKALSCLMAVD EASASNVLVLPGFSLPKLVLQVVTVDSIFKVTGPALNELIIFKETAFAVFNKARRITKGSSYNIQSSSVSGRSHSSTTPVVSIPSMWKDCVGPRMGGPPH PREGDIDASLRPGAWDNSWQTIRAGGLNCDTSRNGDVSILDETPYMLEPLFILSEPGSLEHAVAPALYNNATTDSSKVMSDDGNGGLMQNTSSSGSGNAS SSSQHDGSSYRKALPSLHCCYGWTEDWRWLVCIWTDARGELLDSQIFPFGGISSRQDTKGLQCLFVQVLQQGCQLLQACSSPDVTVKPRDFVICRIGNFF ELEYLEWQKAIYSVGGAEVKKWPVQLRRSIPGSCNGSSSLQQQQEISLSQERTLPSSPSSLYSPHSKASNFMKGGLAQPSGRKQLMSGHTAVDSTKGILH PVKPPSSTSASYLLIPSSSMRFLPSNPLQLPTCLTAESPPLAHLLHSKGSAIPLSTGFVISKAVPSVRKDLRSNSRDEWPSVLSVSLIDSYGGNSNISTA DKIGTRSNETETNLILGTVAAELHALSWMTISPTYLERRSALPLHCDMVLRLRRLLHFADKELSSQPDKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10016683 [exp]	0	1
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	2.6	0.9153
AT5G35930			AMP-dependent synthetase and l...		Lus10009528 [exp]	4.0	0.9045
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009711 [exp]	6.5	0.8921
AT1G16800			P-loop containing nucleoside t...		Lus10037303 [exp]	7.2	0.8844
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014896 [exp]	8.0	0.8960
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016881 [exp]	8.4	0.8885
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040891 [exp]	9.2	0.8922
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10009083 [exp]	9.6	0.8992
AT1G58230			binding (.1)		Lus10042866 [exp]	9.7	0.8938
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10032833 [exp]	12.5	0.8696

Compare expression of checked genes

Lus10016683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.