Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55325 654 / 0 MAB2, GCT MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) AT4G35470 569 / 0 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT2G17440 548 / 0 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT3G26500 194 / 4e-53 PIRL2 plant intracellular ras group-related LRR 2 (.1) AT5G05850 187 / 2e-50 PIRL1 plant intracellular ras group-related LRR 1 (.1) AT3G11330 183 / 3e-49 PIRL9 plant intracellular ras group-related LRR 9 (.1) AT1G12970 180 / 2e-48 PIRL3 plant intracellular ras group-related LRR 3 (.1) AT4G26050 154 / 3e-40 PIRL8 plant intracellular ras group-related LRR 8 (.1) AT2G19330 141 / 4e-36 PIRL6 plant intracellular ras group-related LRR 6 (.1) AT4G29880 130 / 2e-32 PIRL7 plant intracellular ras group-related LRR 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035973 [exp] 1195 / 0 AT1G55325 1843 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10035976 [exp] 877 / 0 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10000900 [exp] 385 / 3e-121 AT4G35470 409 / 2e-138 plant intracellular ras group-related LRR 4 (.1) Lus10004559 [exp] 243 / 3e-73 AT4G35470 274 / 1e-89 plant intracellular ras group-related LRR 4 (.1) Lus10013689 [exp] 185 / 1e-50 AT3G11330 473 / 3e-165 plant intracellular ras group-related LRR 9 (.1) Lus10017948 [exp] 187 / 3e-50 AT3G11330 557 / 0.0 plant intracellular ras group-related LRR 9 (.1) Lus10003229 [exp] 139 / 2e-35 AT2G19330 408 / 4e-142 plant intracellular ras group-related LRR 6 (.1) Lus10021635 [exp] 121 / 4e-30 AT5G07910 360 / 6e-127 Leucine-rich repeat (LRR) family protein (.1) Lus10000681 [exp] 118 / 4e-29 AT5G07910 357 / 2e-125 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G220800 [exp] 886 / 0 AT1G55325 2185 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Potri.001G004200 [exp] 868 / 0 AT1G55325 2185 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Potri.007G065000 [exp] 660 / 0 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.005G098600 [exp] 652 / 0 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.003G090100 [exp] 464 / 5e-151 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1) Potri.001G144100 [exp] 460 / 2e-149 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.015G083800 [exp] 192 / 3e-52 AT3G11330 471 / 9e-163 plant intracellular ras group-related LRR 9 (.1) Potri.010G046500 [exp] 182 / 2e-49 AT1G12970 493 / 7e-173 plant intracellular ras group-related LRR 3 (.1) Potri.012G085600 [exp] 182 / 7e-49 AT3G11330 427 / 8e-146 plant intracellular ras group-related LRR 9 (.1) Potri.018G139700 [exp] 144 / 6e-37 AT2G19330 406 / 2e-141 plant intracellular ras group-related LRR 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10016684 pacid=23149047 polypeptide=Lus10016684 locus=Lus10016684.g ID=Lus10016684.BGIv1.0 annot-version=v1.0 ATGGATGCGACGCAGGTACTACCTGTGGATGAAGTGGTGGCGGAAATCATGAAAATTCACAGATCTTTACCTGCAAGGCCCTCAATCGACGAGGTTGAGG CAGCCAATGAATTGATCCAGACCGTTGACAAAGAAGAAGAGGCTAGGCTTGATGCCATCTACCGACAGCGCAAGGGCCCTGATGTACCTGAAGAACTCTT CTCCATTCTCGTTGAGATGCACAACAACTCTGTCTCTTTCCATAGCAAGGACCAGAAGCGTGACGCCCTCAGATTGCTCGACCTAGAAAACCTCCACTCT CATTTCGACCATCTTATCCAGAGAGCGTCCATGTGTTTACCTTCTTCCTCATCCTCTTCATCTACCCCTAACTATGCTACTGCTTCCGTTTCCGGCGGAA CTACTTCTAAGCCTGCAGCCGGATCTTCGTCTTCCTACGCCATAAAATCCAGCTTTCATTTTTCGGAAAAGCAGCCTGTCGGAGCTGCGGATTTGGTTAC CAGAGATGACAGCTACATGAAGAAGGCGAAGCCATTATTTTACTCCGGAGGAGCCGCTACTGCTGCTGGAATTGGTGTTCGAGAACCAACCATACTGGAT TCGACTCTGAGATCCACGATTATCGCTTCAGGTCAAGATGGCGGTGATAAATTGAGCCTCATTAAGCTAGCTAGTCTAATAGAAGTCTCTGCTAAGAAAG GCGCTACGGAGCTCAACCTCGCGAGTAAGCTGATGGATCAGATTGAGTGGCTACCTGATTCAATAGGCAAGTTATCAAGTTTGGTAACATTAGATTTGTC TGACAATAGGATTATGGTCTTGCCACCCTCCATTGGCGGCCTCTCTTCCTTGACAAGATTGGATTTGCATTCAAACAGAATTGCTCAGCTACCCGAATCC TTTGGCGATCTACTTAGCTTGGTCTTTCTGGATCTCCGTGCTAACCAGTTATCCACACTTCCTGCTACAATTGGAAGATTGGCTCGCCTCGAGCATCTCG ATCTGAGCTCAAACCGGCTCAACTCCCTTCCGGATTCAATAGGATCACTAGCTAGCCTGAAAAACCTGAGCATTGAGACGAACGAGGTTGAAGAGCTTCC ACATACTGTGGGACATTGTACTTCGCTGAAGGAGCTCCATGCAGATTACAACAAGTTGAAAGCCCTTCCGGAAGCTGTGGGTAAGATAGAGACATTAGAG GTTCTCTCTGTGCGCTACAACAACATCAGACAGCTGCCAACAACCATGTCATCTCTAGTGAATCTGCGGGAGCTTGACGTGAGTTTCAATGAGCTGGAGG CAGTGCCTGAGAGCTTGTGTTTCGCCACTTCTCTTGTGAAGATCAATGTTGGAAACAACTTTGCTGACCTTAGGTTCCTCCCGAGGTCCATTGGGAATCT TAGCAACCTTGAGGAGTTGGATATAAGCAACAATCAGATTCGCATTCTTCCAGACTCATTCCAGCTGCTTTCCCGGTTGCGGGTCCTGCGAGTGGAAGAG AATCCTCTTGAGATGCCGCCAAGGCATGTGGCTGACAAAGGCGCACAGGGAGGTCTTCAACATGTATCATGGTTCCAGTTTCTCCCTCATGAATCTGAGT TGATCTCTGTATCTGATAAGAGTTTAAAAATTGATCAAAAAGATGCTGCTATGTGGTTGGTGCTTTCATCCCATTTGCAGTTGCAGAAGGGGGGATTTCT GAGTACATGGACCAATTCTTTTGTTGGACCTTGGGATCCATCTCAAGGTCTTCACAATCCAGATGAGAAAATCAAGCTTTGGCTTTTTCTCCCCGGGCGT CATTCTTCTGTTGTCGAGAGAGCTCAGTCAGCAGTTGCTAAATTAAGAGTTGTTGCATCTGGAATTTGGGTGGCACCTGGGGATTCTGAAGAGGTTTCTT CTGCACTTTCTCAGTCTTTAAGGAATCGCATTGAAAAGGCACTTCTTGGAGTGTCTTACATGAGATATGGAGACGTATTTTCAAAGCATCGTCCATGTCA AACTGAATCACTTTACAGGAGAGGACAGCCTACTATTGAATTCGTGTTTGCAGCCACTGAAGAAGCTATTTTTGTCCATGTTATAATATCTGCAAAGCAT ATTCGCATGCTTTCAGCTGGTGATATCGAAAGTGTGTTGAAGCACTCATCTAAAGATTCTAGCTACAGACTTCCAGTCATCGTTTCTCCTCATGGAATAC GTGGCTGGGTTACGGGATGTTGTCCAAATGATGTTATCAAGCAAGTCTATGCAAGTTCTGGCCACTCTAGGATGCAAGATGGTTTTACTGCTTCACTAAA GGATGTCTCTCAAGGGCCTGCTTTCCAGCCGAGGGGGCAGCATTTATATGTTGAAGTTGCACTTGGTTGCCCTAGATATGAGAGTAGCAAGTCATTGCAA TTGGGCTCCAGTTCAGGTAAGAATCTACAAAAAAACCATGCAGCAGAATCTCCAGCTGTGGCAAGAGGCGATCACAGTGGTTTACAAGATCACCCCTCTG TGAATGAGAAGATATTCATCTATCCGGTTGAGGCTGTTGCTGTCCCTCTTTTACACACCTCATTTGCTCGGTCTTCTCTCAGACGATTTTGGTTACAAAA TTGGGCAGGGCCATCAATGTCCGGTGCAGCTTTCTTTATGCATTGTGGAGCTAATATAGACAATGCAGATGGTTCTTGGCTCGACTCTGGCGGAGCACTT GTGCACCATGGCTACAACAGTAGTAGCAATAGTAACAATAGTAGCATTAGCTTGATCAGCAACAGCTCCAGTGATAGTGATTATAATATGGCCATAGATG GAGGGGACCTAGACGCAGATGCAGATTCGTTGTCATGCAGGCGATCTGGTTTGTCTTCAAATGATCATCTAGAAAATGATCTCCATAAACTGGGTTCTAA GCGTACTCGGGCAGGAATGGAATCGTTTGGTCAGTTAGGTAGAGCTAAAAGTGCTTCTATTCAAGAAGCTTACAAGTCTGATTTGGGGTCCATTGAGGTT AACACTTCAGCTATCACCGGGGTTGCAAATGAACTGAGTGGGTCTCCTTGGGATTGGGATGACGAGAGAGGTATGGGCATGGATATTCAAGCTCTACTTT CCGAGTTTGGTGATTTCGGTGACTTCTTTGAGAATGATGCTTTGCCTTTTGGAGAGCCACCTGGAACTGCAGAGTCGGAGGCTCTAATGTTTTCAGGTCC AGATGTTGGAGAAGTTGGCAGCAGTCCCGTTGGGTCAATGGATGTTGATCAAATGGTTTTACCTGTTGGTCTTCCATCTTTCGATAGCTTTAATCTGCCT CCTTCAGTAACCATGGATGAGTGTGTGAGCAAAAATGAAGAAATGACTCACGGCTGTGTGAGTACAAGCTCAACAAATTCTGCTGCGCCCTCTTGCACGG GTGAGTTTGATCATTTAATCAAGGCTGAAGCTCTTATGACATTTGCTTCAGAGTATGGAGCAGTTGAAACAGCTACTAGTGAGCTCTCTTCCTCAATCTT CAAAAGGCCATATTGTCCCAAGTCTCGTAGTATAGAGAGCTCAAATTCAAATTCAAGCAATTACACATATGGTGCAACTCCTCCCCTTTCTCCTTGTTTT GATGGGTTAGATGACAAGACTACTAGGCATGTTAACCTAAAAGCAGGTACTGGAAGAAGGGACACAAGAAAGTTTTACTCTCACGTTGAAGCTAGTAGAG ACCAATACGAAGACTGTATTGGCAACTGA
AA sequence Show only first row Show all	>Lus10016684 pacid=23149047 polypeptide=Lus10016684 locus=Lus10016684.g ID=Lus10016684.BGIv1.0 annot-version=v1.0 MDATQVLPVDEVVAEIMKIHRSLPARPSIDEVEAANELIQTVDKEEEARLDAIYRQRKGPDVPEELFSILVEMHNNSVSFHSKDQKRDALRLLDLENLHS HFDHLIQRASMCLPSSSSSSSTPNYATASVSGGTTSKPAAGSSSSYAIKSSFHFSEKQPVGAADLVTRDDSYMKKAKPLFYSGGAATAAGIGVREPTILD STLRSTIIASGQDGGDKLSLIKLASLIEVSAKKGATELNLASKLMDQIEWLPDSIGKLSSLVTLDLSDNRIMVLPPSIGGLSSLTRLDLHSNRIAQLPES FGDLLSLVFLDLRANQLSTLPATIGRLARLEHLDLSSNRLNSLPDSIGSLASLKNLSIETNEVEELPHTVGHCTSLKELHADYNKLKALPEAVGKIETLE VLSVRYNNIRQLPTTMSSLVNLRELDVSFNELEAVPESLCFATSLVKINVGNNFADLRFLPRSIGNLSNLEELDISNNQIRILPDSFQLLSRLRVLRVEE NPLEMPPRHVADKGAQGGLQHVSWFQFLPHESELISVSDKSLKIDQKDAAMWLVLSSHLQLQKGGFLSTWTNSFVGPWDPSQGLHNPDEKIKLWLFLPGR HSSVVERAQSAVAKLRVVASGIWVAPGDSEEVSSALSQSLRNRIEKALLGVSYMRYGDVFSKHRPCQTESLYRRGQPTIEFVFAATEEAIFVHVIISAKH IRMLSAGDIESVLKHSSKDSSYRLPVIVSPHGIRGWVTGCCPNDVIKQVYASSGHSRMQDGFTASLKDVSQGPAFQPRGQHLYVEVALGCPRYESSKSLQ LGSSSGKNLQKNHAAESPAVARGDHSGLQDHPSVNEKIFIYPVEAVAVPLLHTSFARSSLRRFWLQNWAGPSMSGAAFFMHCGANIDNADGSWLDSGGAL VHHGYNSSSNSNNSSISLISNSSSDSDYNMAIDGGDLDADADSLSCRRSGLSSNDHLENDLHKLGSKRTRAGMESFGQLGRAKSASIQEAYKSDLGSIEV NTSAITGVANELSGSPWDWDDERGMGMDIQALLSEFGDFGDFFENDALPFGEPPGTAESEALMFSGPDVGEVGSSPVGSMDVDQMVLPVGLPSFDSFNLP PSVTMDECVSKNEEMTHGCVSTSSTNSAAPSCTGEFDHLIKAEALMTFASEYGAVETATSELSSSIFKRPYCPKSRSIESSNSNSSNYTYGATPPLSPCF DGLDDKTTRHVNLKAGTGRRDTRKFYSHVEASRDQYEDCIGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10016684 [exp]	0	1
AT3G12590			unknown protein		Lus10001699 [exp]	2.8	0.9450
AT4G28760			Protein of unknown function (D...		Lus10011912 [exp]	3.2	0.9236
AT3G06240			F-box family protein (.1)		Lus10019739 [exp]	3.2	0.9083
AT4G28760			Protein of unknown function (D...		Lus10022843 [exp]	5.3	0.8916
AT3G12590			unknown protein		Lus10005160 [exp]	13.5	0.9145
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10017729 [exp]	15.8	0.8379
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10001415 [exp]	20.6	0.9136
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Lus10040315 [exp]	23.3	0.8891
AT5G10470		KAC1, KCA1	KINESIN CDKA;1 ASSOCIATED 1, k...		Lus10035941 [exp]	28.6	0.9068
AT1G76850		SEC5A	exocyst complex component sec5...		Lus10011294 [exp]	29.3	0.8386

Compare expression of checked genes

Lus10016684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.