Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64440 408 / 7e-135 ATFAAH fatty acid amide hydrolase (.1) AT3G25660 118 / 8e-28 Amidase family protein (.1) AT5G07360 86 / 3e-17 Amidase family protein (.1.2) AT5G09420 84 / 1e-16 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT1G08980 81 / 6e-16 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT3G17970 72 / 6e-13 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT4G34880 50 / 5e-06 Amidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020468 [exp] 398 / 3e-131 AT5G64440 781 / 0.0 fatty acid amide hydrolase (.1) Lus10007094 [exp] 387 / 9e-127 AT5G64440 795 / 0.0 fatty acid amide hydrolase (.1) Lus10007095 [exp] 377 / 2e-121 AT5G64440 776 / 0.0 fatty acid amide hydrolase (.1) Lus10020781 [exp] 144 / 6e-36 AT3G25660 780 / 0.0 Amidase family protein (.1) Lus10007361 [exp] 129 / 3e-31 AT3G25660 795 / 0.0 Amidase family protein (.1) Lus10020469 [exp] 91 / 2e-20 AT5G64440 163 / 2e-46 fatty acid amide hydrolase (.1) Lus10043019 [exp] 87 / 2e-17 AT5G07360 858 / 0.0 Amidase family protein (.1.2) Lus10032519 [exp] 83 / 3e-16 AT5G07360 847 / 0.0 Amidase family protein (.1.2) Lus10042001 [exp] 82 / 5e-16 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098600 [exp] 760 / 0 AT5G64440 478 / 2e-162 fatty acid amide hydrolase (.1) Potri.005G070300 [exp] 757 / 0 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1) Potri.001G285900 [exp] 386 / 3e-126 AT5G64440 769 / 0.0 fatty acid amide hydrolase (.1) Potri.018G086350 [exp] 113 / 2e-26 AT3G25660 766 / 0.0 Amidase family protein (.1) Potri.015G109400 [exp] 88 / 5e-18 AT5G07360 823 / 0.0 Amidase family protein (.1.2) Potri.004G171300 [exp] 84 / 7e-17 AT4G34880 473 / 5e-164 Amidase family protein (.1) Potri.013G024200 [exp] 81 / 7e-16 AT1G08980 519 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Potri.001G205300 [exp] 81 / 1e-15 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.015G038600 [exp] 79 / 4e-15 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.009G130700 [exp] 73 / 3e-13 AT4G34880 528 / 0.0 Amidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [flax] [poplar] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Lus10016685 pacid=23149073 polypeptide=Lus10016685 locus=Lus10016685.g ID=Lus10016685.BGIv1.0 annot-version=v1.0 ATGACGAATAACAACAAGAAGAGTAGTGCAGCAGAAATCAATGATGTGGGTCGCTGTCCTCCGTCGTCTGAACATCAATCTTATCTCAGTTCCAATGTCA AAGGTCGGTTCCAGACCATCGATATTGTTCTCCTCCGATCTCTTTTCCGGTTGCCGCCGCCTGTAGCTAATTTAACTCATTTTTTCTTTGCAAAAGCTCC ACGCATGGGTGGAGTGGTGGTGAGAACAGTTGCCTGGCTTCTGGAGTCCCGAATTTTGGGGACCTGGCTGATTTACCTTCTCAAGAGGGACAATCTCATT CATAAGCTAGTTACAAATGCTGAGCTAGAAGAATCGCCTGTCTATGTTCCTCTGCATCCCTTTCAAGGCTGGTTCACTATTCAATTAAAGGAGCATGAAG TTAAGCAGATTGATTCGCAACCAGCGGACCAGGTCCAGAAAACAATAGAATATTGTTTGCCTTTGAGATCATCACCAGCTGCATCCAAACCTCTGTCTTC TACTTCTTCTGCTACTCATTTCCATCGATGGACTATCATGGACTACTTTGCAGCCTATACCAATCGACAAGTTACTCCATACACGGTGGCAGAAAGATTA CTAAAAGCAATTAAAGAATCTTCAATTGCACCGTTGGAGATGGGATTCTTTATTAATTATTGTCAAGAGGACATCTTAAAACAAGCTACGGAGTCAACTC TTCGCTATGAAAAGGGAGATGCAATATCTGTCTTAGACGGCGTCCCAATTGCCATCAAAGATGAAATCGACTGTGCTCCGTATCCAACAACAGGAGGTAC AAAGTGGCTACATAAAGTAAGAGAATGCAAAGGAGATGCAGAATGTGTAACGAGGCTGAGACAATGCGGGGCAGTGCTGATCGGGAAAACAAACATGCAT GAGCTTGGCGCTGGAACTAGTGGAATTAATCCGCATTACGGGGCTGCTAGAAACCCGTTTGATATGGGTAAGATTGCTGGAGGATCTTCAGGGGGATCAG CTGCAGTAGTGGCTGCCGGACTTTGCCCGGTAGCGCTCGGCGTTGACGGTGGAGGGTCCGTAAGAATGCCAGCAGCTCTTTGTGGGGTTATTGGTTTCAA GCCCACCTTTGGACGAGTCCCACACTCTGGGTATCAACTCGTTCTCCCTCTAAATTGGACGGTGGGGATGGTTGGAGTGTTGGCAGGAACGGTTGAGGAT GCATTGATTGTATATTCAGCCATTGCTGGAGAAATGAAAACATTGGAGCACACTGATAAAGAGTTGAAAATAAAGTGGTTCAACGATTGCAACATGGAGA TAAGAGAATGTTGCTCTCGTGCATTGGATCTACTATCTCGTCAATACGGCTGGGAGACCGTAGAGGTGACAATACCAGAAATTGAAACAATGCGGCTAGC ACACTATGTGACCATTGGATCTGAATGCAGCACTGCTCTTGCCTCTCACCTTCGCAATTCCAAGTTGGTACCTAAAATGAATGTGAGAAAGTCAGGATGG GATGTGAGGGTGGGTCTTTCTATTTACAGAGCTTTCAGTGGTAAAGAGTATATACAAGCTCAAAGAATAAGGAACCGACAACTACAAATTCACAAGAATG TGTTCACGAAGGCTGATGTAATTGTCACACCAACAACAGGGTACTCGGTAACAGCTTATCCAATACTAAATGACTGTCTAAAGACTGGTGAACTTGACTA TGTTAATGGAGCGGCACTTATTCGATATCAAATCGCTGGAAATTTCCTAGGACTTCCTGCAATTACTGTTCCCGTGGGATACGATAACAAAGGATTGCCA ATTGGGCTACAGTTCATTGGGAAGCCATGGTCTGAACCGACACTTCTCCATATTGCATTTGCGATGCAGGGAATATGCAACCAAGACTACAAAAAGCCGA CAGTTTTCTACGATTTGCTTCAGATATAA
AA sequence Show only first row Show all	>Lus10016685 pacid=23149073 polypeptide=Lus10016685 locus=Lus10016685.g ID=Lus10016685.BGIv1.0 annot-version=v1.0 MTNNNKKSSAAEINDVGRCPPSSEHQSYLSSNVKGRFQTIDIVLLRSLFRLPPPVANLTHFFFAKAPRMGGVVVRTVAWLLESRILGTWLIYLLKRDNLI HKLVTNAELEESPVYVPLHPFQGWFTIQLKEHEVKQIDSQPADQVQKTIEYCLPLRSSPAASKPLSSTSSATHFHRWTIMDYFAAYTNRQVTPYTVAERL LKAIKESSIAPLEMGFFINYCQEDILKQATESTLRYEKGDAISVLDGVPIAIKDEIDCAPYPTTGGTKWLHKVRECKGDAECVTRLRQCGAVLIGKTNMH ELGAGTSGINPHYGAARNPFDMGKIAGGSSGGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVIGFKPTFGRVPHSGYQLVLPLNWTVGMVGVLAGTVED ALIVYSAIAGEMKTLEHTDKELKIKWFNDCNMEIRECCSRALDLLSRQYGWETVEVTIPEIETMRLAHYVTIGSECSTALASHLRNSKLVPKMNVRKSGW DVRVGLSIYRAFSGKEYIQAQRIRNRQLQIHKNVFTKADVIVTPTTGYSVTAYPILNDCLKTGELDYVNGAALIRYQIAGNFLGLPAITVPVGYDNKGLP IGLQFIGKPWSEPTLLHIAFAMQGICNQDYKKPTVFYDLLQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10016685 [exp]	0	1
AT1G54730			Major facilitator superfamily ...		Lus10033815 [exp]	2.6	0.9494
					Lus10024084 [exp]	2.8	0.9646
AT4G29990			Leucine-rich repeat transmembr...		Lus10025849 [exp]	3.5	0.9537
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10033087 [exp]	4.7	0.9449
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10010190 [exp]	4.9	0.9280
					Lus10014719 [exp]	5.1	0.9585
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10002174 [exp]	6.5	0.9432
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10019637 [exp]	7.5	0.9540
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10028770 [exp]	9.4	0.8787
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015169 [exp]	9.5	0.9513

Compare expression of checked genes

Lus10016685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.