Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65960 344 / 2e-115 GTP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035977 [exp] 730 / 0 AT5G65960 372 / 1e-126 GTP binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G177100 [exp] 373 / 1e-126 AT5G65960 394 / 1e-135 GTP binding (.1) Potri.007G064500 [exp] 243 / 8e-77 AT5G65960 271 / 2e-88 GTP binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10199 [flax] [poplar] Adaptin_binding Alpha and gamma adaptin binding protein p34 CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10016687 pacid=23149110 polypeptide=Lus10016687 locus=Lus10016687.g ID=Lus10016687.BGIv1.0 annot-version=v1.0 ATGGCAGGAAAGGAAGTGATGGAAGTAGGTGAAGAACTGAGTAGTAGATGTTCATCACCGGTGGACAACAGGCCTGGAATCCTCATCGTCGGTTCTTCCA GCGTTGGCAAACGCACCCTCCTCTCCCGTTTGCTTTCACTGGATCTAGAAGATGATGCCGATTCCGATTCTCAGTGGCTCGTCCGTGGGTGGACGATCGA CACAAAGTACTACGCCGCTGATGTATCTGTCTGGGTTGCTCATCTCACTGATGGATTCAGTATCGAGAATTTCCCAGAGCGTCGACGATTGGCCGCCCTG GTCATGGTCTTCGATGTCACCGATCCCTCGTCGCTTGGTGCGGTTCAGGATTGGGTATCCCGCACTCATATCCACGAGTTCGAGATACTGTTGTGCGTAG GGAACAAAGTGGATCTTGTTTCGGGTCACCCTGTCCACCAAGAGTACAGAAGGCGGTTAATGATGCAACAGCAAAAGCTTGAGCTTCAGCAATCTTCCAC TTCTGAGTTCGGAATCTCTGAAACTGAAGGTACTAATTTGCTAGTGCGCGAGGAGGAGGAAGAACAAGAAGAGGAGGAGGAGGAGCAATCCTCGCAGATC AGGAGGTCCTGTCTTCAATGGTGCACTGAGCGGAATATCGAGTACATTGAAGCTTGTGTTTCCAATCCCGACTTCGATAAATGTCTATCTGTTGATGGTG ACTCTCAAGGGGTTGATCGACTTGTTGGTGCACTTTCTGCTCATATGTGGCCTGGTATGATCTTGAAATCAGGAAATAAGATGGCAGAACAACCGTTACC AGATGAAGAAGACTTGTCTGAAGACTCCGACTATGAATTAGAGTATGAGGTGCTGTCAGAAGGTTCTGGAGAACCGTGGAATGACAATAGTCCTAGATGG GTTTCTGCCGATTGTATTACTTCTACTTCTAGTGCAGGGGAAAATTTTGAAAACAGTTATGTCAGTGGACTGGCACATGGAGAGAAAGAAGGTTCTCGTA TGGTATCAGATGCAGGGGAAGGTGTTGCAACAAAGCATGATGTTACTGGAAGTGATGAAAAGAAGGGGGAAAAGTGTTATCTAGGAAATTTGCAGCCGCC GATACCAACAGGAGAATCACCAGAAGATGACAAAGGAGCAGTGACCGGTCAAGTGGTAGCTGAAGACGACAAGGAGTGTAATGAAGTTGCACCATTTGAC TTTGATGACTTGGAACAGCTGATGTCTGAGATTGGAAACATAAGGGACAACTTGAGATTGATGCCAGATTTTCAAAGGAGGGAAATGGCTGCAAATCTTG CTATGAAAATGGCTTCCATGTTTGGTGGTGGAAGTGATGAGGAAGAGGAGCTATAG
AA sequence Show only first row Show all	>Lus10016687 pacid=23149110 polypeptide=Lus10016687 locus=Lus10016687.g ID=Lus10016687.BGIv1.0 annot-version=v1.0 MAGKEVMEVGEELSSRCSSPVDNRPGILIVGSSSVGKRTLLSRLLSLDLEDDADSDSQWLVRGWTIDTKYYAADVSVWVAHLTDGFSIENFPERRRLAAL VMVFDVTDPSSLGAVQDWVSRTHIHEFEILLCVGNKVDLVSGHPVHQEYRRRLMMQQQKLELQQSSTSEFGISETEGTNLLVREEEEEQEEEEEEQSSQI RRSCLQWCTERNIEYIEACVSNPDFDKCLSVDGDSQGVDRLVGALSAHMWPGMILKSGNKMAEQPLPDEEDLSEDSDYELEYEVLSEGSGEPWNDNSPRW VSADCITSTSSAGENFENSYVSGLAHGEKEGSRMVSDAGEGVATKHDVTGSDEKKGEKCYLGNLQPPIPTGESPEDDKGAVTGQVVAEDDKECNEVAPFD FDDLEQLMSEIGNIRDNLRLMPDFQRREMAANLAMKMASMFGGGSDEEEEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65960			GTP binding (.1)		Lus10016687 [exp]	0	1
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10000353 [exp]	2.0	0.8856
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10040468 [exp]	5.0	0.8866
AT1G22900			Disease resistance-responsive ...		Lus10025804 [exp]	5.7	0.8716
AT5G47540			Mo25 family protein (.1)		Lus10010497 [exp]	12.3	0.8272
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Lus10032963 [exp]	13.5	0.8539
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10041794 [exp]	13.5	0.8628
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10034073 [exp]	15.7	0.8633
AT3G53140			O-methyltransferase family pro...		Lus10023892 [exp]	18.1	0.8809
AT5G02100		UNE18, ORP3A	UNFERTILIZED EMBRYO SAC 18, OS...		Lus10010843 [exp]	21.4	0.8551
AT4G37030			unknown protein		Lus10011021 [exp]	21.5	0.8555

Compare expression of checked genes

Lus10016687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.