Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17525 653 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65980 462 / 1e-154 Auxin efflux carrier family protein (.1) AT2G17500 444 / 1e-147 Auxin efflux carrier family protein (.1.2.3.4) AT1G76520 328 / 3e-103 Auxin efflux carrier family protein (.1.2) AT1G20925 324 / 9e-101 Auxin efflux carrier family protein (.1) AT5G64320 214 / 2e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 210 / 6e-57 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01990 199 / 8e-56 Auxin efflux carrier family protein (.1) AT4G11690 195 / 4e-53 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G64583 190 / 1e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035981 [exp] 1147 / 0 AT2G17525 684 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035978 [exp] 736 / 0 AT5G65980 486 / 2e-172 Auxin efflux carrier family protein (.1) Lus10012708 [exp] 555 / 0 AT5G65980 494 / 2e-175 Auxin efflux carrier family protein (.1) Lus10001303 [exp] 553 / 0 AT5G65980 491 / 6e-174 Auxin efflux carrier family protein (.1) Lus10025166 [exp] 330 / 7e-104 AT1G76520 455 / 8e-160 Auxin efflux carrier family protein (.1.2) Lus10004287 [exp] 305 / 2e-94 AT1G20925 430 / 1e-148 Auxin efflux carrier family protein (.1) Lus10016046 [exp] 281 / 2e-85 AT1G20925 392 / 2e-133 Auxin efflux carrier family protein (.1) Lus10006373 [exp] 226 / 5e-62 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 225 / 9e-62 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G102400 [exp] 754 / 0 AT2G17525 756 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G099300 [exp] 503 / 4e-170 AT2G17500 475 / 2e-167 Auxin efflux carrier family protein (.1.2.3.4) Potri.002G003500 [exp] 332 / 1e-104 AT1G20925 499 / 4e-176 Auxin efflux carrier family protein (.1) Potri.001G456300 [exp] 324 / 2e-101 AT1G76520 382 / 5e-131 Auxin efflux carrier family protein (.1.2) Potri.001G456400 [exp] 321 / 2e-100 AT1G76520 419 / 1e-145 Auxin efflux carrier family protein (.1.2) Potri.011G145600 [exp] 308 / 1e-95 AT1G76520 368 / 2e-125 Auxin efflux carrier family protein (.1.2) Potri.003G108100 [exp] 295 / 2e-90 AT1G76520 398 / 4e-137 Auxin efflux carrier family protein (.1.2) Potri.011G145700 [exp] 286 / 3e-87 AT1G76520 396 / 2e-136 Auxin efflux carrier family protein (.1.2) Potri.006G015900 [exp] 224 / 5e-62 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 214 / 3e-58 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10016688 pacid=23149080 polypeptide=Lus10016688 locus=Lus10016688.g ID=Lus10016688.BGIv1.0 annot-version=v1.0 ATGGGTTTGTGGACACTACTTGAGGTAGCTTGTATGCCAGTGATACAAGTCCTCATCATCGGCTTCCTGGGGGCTTTCTTGGCAACTGACTACTGCAACA TTCTACATGCTGATGCTAGAAAATACATGAACAAGATTGTTTATGCGGTTTTCACACCTGCTCTCATGTTTTCCATTCTGTCCACAACTGTCACTCTGGA GGACATTATCTCATGGTGCATGCCCTCTACTCACTGTTTGATTGCATTTGTTTCTGGGTGGTTTATGCCTATTAACATCGGCCTCACAGTATTATTTGGT GCAATTTTGGGATGGATATTGGTCAAGTTATTGCGACCCAAGCCTCATCTCCAAGGTCTTATCATTGCTACCTGTGCCACTGGAAACTATGGGAATCTGC TGCTGATAGTTGTGCCAGCAATGTGCAAAGAAGAAGGAACCCCATTTGGCGATCATTCAAAATGCGCTTCCATTGGACTCTCATATGCTTCCTTCTCTTG TGCACTTGGTGGTGTCTTTTTCTGGACCTTTGGTTACCAACTCATCCGCAACTCTGCTACTCAATTTAAAGCCTCCAACAAACACCTAGAATCTACTCAT CTTCTTAACAAACAAGAAGAACAAGAAGAAGAAGCAGCAGAAAGCAGTTATCTTCAAGATTCAGAAATTCCATCTATTGATGGAGAAGGCAAGCTGTCTA AACTAGTAGTTGTTCTGCATCAGATATTCCACGAGCTCACTGCTCCTCCTACGCTTTCTGCGATGCTGGGTTTCTTGTTTGGAGCTACAGCATTTCTGAG GAACATGGTAGTAGGTGTCGATGCACCGTTGCGTGTTATCCAAGACTCCATTTCATTACTTGGGGATGGGGCAATTCCGTCCATAACTCTTATACTGGGA GGGAACCTCACTCGAGGGTTGCGGTCTGCAAACATGAAACCATGGATGATCGTGGGGGTGGTGTGCGTAAGATACGTAATAATGCCGGTGATTGGGATAT GCGTGATAAAGGCAGCTACCAGTGCTGGGCTTCTACCTTCGGATCCTCTGTTCACCTATGTACTAATGCTGCAATACACTATCCCACCCGCTATGAATAT TGGTACCATCACCCAGCTGTTTGATGTGGCTCAAGAGGAGTGCTCTGTTCTCTTCCTTTGGACTTACTTGCTAGCAGCCGTAGCTTTCACCTTCTGGTCT ACTAAATCCCCATCCCAAGCTCTTGGTACCTTCGAATGGGCCTCTACCATCCCCAATTTCACTCACTCCCTCGCCACCTATCGTGCGCTTATCCACGCGC TATGCACCTTCCGGCGATTCGATGCTGTCGACCAACTGCTCGACGAAATGCCCGCATCCATCGGCGCACCCCCTGACGATGCTGTTTTCATTATCTTCAT TCGAGGCCTTGGTAGGGCTGGCCTCCTTCACCGTGTCGTCAAAGTGATCGACTTGGCTTCCAAGTTGCAGGCCAATCCTCCGTCTTTGAAGCTCTTCAAC TCCGTCCTCGATGTCCTCGTCAAGCATGATATCGATTTGGCTCGGCATTTCGTTAGAAACAGGATTATGAAATGTGGAGTGCAGGGTGATGATTATACGT TTGGGATTCTGATGAAAGGTCTTTGTTTGACAAATAGAATCGGTGATGGATTCAAGCTTTTGCAGCTCATCAAGTCTGCAGGTTCGAATCCAAACTCCGT TGTTTACAACACTTTACTCCATGCCCTTTGCAAGAATGGGAAAGTTGGAAGGGCCAGGAGCCTGATGAATGAGATTCAGGAACCCAACGACGTCACTTTC AACCTTCTAATATCGGCTTACTGTAAAGAGGATAACTTAGTTCAGGCACTTGTCATGCTGGAGAAGAGTTTCAGCCTAGGGTTTATACCCGATATTGTTG CAGTCACTAAGGTGGTGGAACTTCTTTGTAATCGAAGCCGTGTGACTGAGGCTGCTGAGGTATTAGAAAGATTCAAGAGCAAGGGAGGTGATGTTGACCT CGTAGCGTGCAACACTTTGATCAAGGGACTCTGTGGATCAGGAAAAGTTAAAGCTGCCTGTGGATACTTGAAGGAGATGGAACTAAAGGGATGTCTTCCC AATGTGGAGACGTACAATTTGTTGATATCTGGTTTCTGCGGATGCAGGATGTTGGACTCCGCTCTTGACTTGTTTGACGAGATGAAGGTGGCAGGGATCG ATTGGAATCTTGATACATTTGATGAGCTTATCAGAGGATTGTTCTCCGGGGGGGGGATTGAAGCCGGATTCAAGATTTTACAACTGATGGAGGAGAGGAA AGGAGGTTGCAAAGGTCGAATTAGTCCTTACAACAGCGTGGTGTACGGGTTTTACAGGAAACAAATGTGGGATGAGGCTCTTGAGTTCTTGGTGAAGATG GAAAAGCTGTTTCCTAGGGCTGTGGAAAAGAGCTTGAGGATATTGGGGGATTGCGAGAAGGGTGCAATGGAGGAGGCAAAGAAGGTGTATGATGAAATGG TTGATGAAGGAGGGATGCCAAGTGCTCTGGTTTATGACTACTTAATCCATGGATTTTGTGAACAAGGAAGTGTGGACAAGGCATTTGAAATGATGGAGGT AATGTTAGGGAGTGGTCACTGTCCTGATAAATCAGCTTTGACTGCGGTGATTGGGGAGTTATGTATCAAAGGAAAGGAAGATAGTGCAGTGAAAGTGGTG GAGGACATAGTTGGGAGAGGTTGGTTAGTGAGTGCTGGAAGCTATAGTAGAATAATATATGTGCTTTGTGGGAAAGAGAGGTATGGGAAAGCAGCTAGTG TGTTGGTGGAGAGCAAGATTGATCCAGACTGGCAATCTATGCTATTCCAACTGAGTGGAGATGAAATCTGGATCGCAAACTATTCTACTTCAGAGCTAAA TAATTTAGTGGATCGGATCATTGATTGA
AA sequence Show only first row Show all	>Lus10016688 pacid=23149080 polypeptide=Lus10016688 locus=Lus10016688.g ID=Lus10016688.BGIv1.0 annot-version=v1.0 MGLWTLLEVACMPVIQVLIIGFLGAFLATDYCNILHADARKYMNKIVYAVFTPALMFSILSTTVTLEDIISWCMPSTHCLIAFVSGWFMPINIGLTVLFG AILGWILVKLLRPKPHLQGLIIATCATGNYGNLLLIVVPAMCKEEGTPFGDHSKCASIGLSYASFSCALGGVFFWTFGYQLIRNSATQFKASNKHLESTH LLNKQEEQEEEAAESSYLQDSEIPSIDGEGKLSKLVVVLHQIFHELTAPPTLSAMLGFLFGATAFLRNMVVGVDAPLRVIQDSISLLGDGAIPSITLILG GNLTRGLRSANMKPWMIVGVVCVRYVIMPVIGICVIKAATSAGLLPSDPLFTYVLMLQYTIPPAMNIGTITQLFDVAQEECSVLFLWTYLLAAVAFTFWS TKSPSQALGTFEWASTIPNFTHSLATYRALIHALCTFRRFDAVDQLLDEMPASIGAPPDDAVFIIFIRGLGRAGLLHRVVKVIDLASKLQANPPSLKLFN SVLDVLVKHDIDLARHFVRNRIMKCGVQGDDYTFGILMKGLCLTNRIGDGFKLLQLIKSAGSNPNSVVYNTLLHALCKNGKVGRARSLMNEIQEPNDVTF NLLISAYCKEDNLVQALVMLEKSFSLGFIPDIVAVTKVVELLCNRSRVTEAAEVLERFKSKGGDVDLVACNTLIKGLCGSGKVKAACGYLKEMELKGCLP NVETYNLLISGFCGCRMLDSALDLFDEMKVAGIDWNLDTFDELIRGLFSGGGIEAGFKILQLMEERKGGCKGRISPYNSVVYGFYRKQMWDEALEFLVKM EKLFPRAVEKSLRILGDCEKGAMEEAKKVYDEMVDEGGMPSALVYDYLIHGFCEQGSVDKAFEMMEVMLGSGHCPDKSALTAVIGELCIKGKEDSAVKVV EDIVGRGWLVSAGSYSRIIYVLCGKERYGKAASVLVESKIDPDWQSMLFQLSGDEIWIANYSTSELNNLVDRIID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17525			Pentatricopeptide repeat (PPR)...		Lus10016688 [exp]	0	1
AT3G28420			Putative membrane lipoprotein ...		Lus10039459 [exp]	1.4	0.8781
AT5G65980			Auxin efflux carrier family pr...		Lus10035978 [exp]	3.2	0.8262
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Lus10018610 [exp]	4.5	0.7986
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Lus10011886 [exp]	5.1	0.8488
AT1G69420			DHHC-type zinc finger family p...		Lus10026632 [exp]	5.5	0.8255
AT1G69420			DHHC-type zinc finger family p...		Lus10036798 [exp]	6.7	0.8457
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10023357 [exp]	9.2	0.8233
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Lus10018020 [exp]	11.4	0.7640
AT5G60210		RIP5	ROP interactive partner 5 (.1....		Lus10011643 [exp]	11.5	0.7756
AT3G28420			Putative membrane lipoprotein ...		Lus10005837 [exp]	12.5	0.8394

Compare expression of checked genes

Lus10016688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.