Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21630 524 / 2e-165 Calcium-binding EF hand family protein (.1.2) AT1G20760 357 / 1e-105 Calcium-binding EF hand family protein (.1) AT4G05520 79 / 8e-15 ATEHD2 EPS15 homology domain 2 (.1.2) AT3G20290 75 / 2e-13 ATEHD1 EPS15 homology domain 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035982 [exp] 1067 / 0 AT1G21630 410 / 3e-129 Calcium-binding EF hand family protein (.1.2) Lus10035983 [exp] 929 / 0 AT1G21630 454 / 4e-147 Calcium-binding EF hand family protein (.1.2) Lus10012248 [exp] 580 / 0 AT1G20760 886 / 0.0 Calcium-binding EF hand family protein (.1) Lus10016028 [exp] 532 / 1e-170 AT1G20760 770 / 0.0 Calcium-binding EF hand family protein (.1) Lus10043181 [exp] 81 / 4e-15 AT3G20290 936 / 0.0 EPS15 homology domain 1 (.1.2) Lus10032563 [exp] 80 / 7e-15 AT3G20290 924 / 0.0 EPS15 homology domain 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G102200 [exp] 1118 / 0 AT1G21630 887 / 0.0 Calcium-binding EF hand family protein (.1.2) Potri.007G063200 [exp] 1007 / 0 AT1G20760 669 / 0.0 Calcium-binding EF hand family protein (.1) Potri.002G008600 [exp] 592 / 0 AT1G20760 825 / 0.0 Calcium-binding EF hand family protein (.1) Potri.005G253000 [exp] 432 / 5e-133 AT1G20760 629 / 0.0 Calcium-binding EF hand family protein (.1) Potri.011G022300 [exp] 81 / 3e-15 AT4G05520 876 / 0.0 EPS15 homology domain 2 (.1.2) Potri.001G356300 [exp] 77 / 4e-14 AT3G20290 938 / 0.0 EPS15 homology domain 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016689 pacid=23149135 polypeptide=Lus10016689 locus=Lus10016689.g ID=Lus10016689.BGIv1.0 annot-version=v1.0 ATGTCGGGGCAGAACCCCAGTGTTGATCTGTTCGACGCATATTTCAAGAGAGCAGATTTGGATGGCGACGGTCAGATCAGTGGCGCTGAAGCAGTTGCTT TCTTCCAAAGTTCCGGTCTTCCCAAGCAAGTTCTTGCCCAGGTGTGGATGTATGCTGACCAGAGAAAAGCTGGATACCTTGGACGACAAGAATTCTACAA TGCTCTCAAGCTTGTTACTGTGGCACAAAGTAAACGGGACCTGACCCCTGATATCGTGAGGGCTGCATTGTATGGTCCCGCTTCTTCAAAAATCCCAGCT CCTCAGATTAATCTTGCAGCCACACCTGCTCCTAAAGTGGCAGCCTCTGTTTCACAGTTTGTTGGGTCAACTTCAGCACCATCTCAGAATGTTGGAATCA GACCAACCCAGCTGCCTGCTCAGGCTAACCAGCAATTCTTACCATCTCCGCAAAACCAGTTTGTGAGACCACTGCAGGCCATGCCTCCTAACTCAACATC CCAGCAACACCAGAATTTTCCTAGGCCAGGTATTAATAGTGGTGCCCCTCCTGCAACTCGCTCTTTGGGTTCAGGCATCTCAACCGATTGGTTAAGTGGA AGTATGAGTGCTCCAACATCTCAACCTCCAAATCAAGGGATTCCTCCTCCTGCCAGACAAGATGGAGTTGTGCCCTCAGCTTCTAGCATGACAACCTCTG TCCAAACCAGACCACTGGTGCCCACTGGGCAGATACCTTCATCACAACCACAAGCTCAAGATCCAGATATTTTCTCTAAGACCCCTGTAGCTAATGATTC TAAATCGTTTGCTGTTTTGGAGAATGGTTTTAATTCTGGCTCAAGTTTTGGTAATGTCTTCTCTGCTACTCCTAATCAATCAAATAAGATTTCCTCTTCA GTTGCTGCTGCTGTCAACAGTTCTGCTGCTCCCCAAATTTCAGTTCAGCCAAGTCCCCTTGGCTCTTTTCCGAACAATGCTCAGCAACTTGTTGGTGGTC AGCAAACAGGAAAACAAATCCAATCAGTTGCAGGTCAAGTTACTAATCCACGTCCCTCGGGCGGTTTTCCTGTTGCAGCCGGAAATGTTACTTCCGGTCA ATCTCGTAGTTTATGGCCAAGGATGATTCCTGCCGACATCCAGAAGTATTTGAAAGTATTTGTACAAGTAGACACTGATAGAGATGGTAAGATCACTGGT GAACAGGCACGCAATCTCTTCTTAAGCTGGAGGCTTCCAAGAGAGGTCTTGAAACAGGTCTGGGATTTATCTGATCATGATAACGACAGCATGCTTTCTG CAAAGGAGTTCTGCGTTGCTCTCTATTTGATGGAACGTTACAGAGAAGGTCGTCCGCTTCCTCCGACTCTCCCAAGCTCAGTAATTTCTGATGAAGCCCT GGTGTCTGCTACCAGCCGCCCAACTGGTTCGTATGGTGGTGGAGCATGGGGACCTGTTCCTGGTCCACGGCAACAACAAGTGGGGGCTGGTACTCGACCA TTGCAGCCTGGCGCACCAAGGCCACCACGGCCTCCGTCTGGTCCTCATTCTGAGGAAAAGCAGCCTAGTCAGCCAAAACCAAAGGTTCCGGTGCTGGAAA AACATCTTGTGGACCAACTTACTCAAGAGGAGCAGGATTCTCTCAACTCAAAATTCCAAGATGCGTCTCAGGCTGATAAAAAGGCAGATGTTGAAGTGGA AGAATTGGAGAAGGAAATTTTGGAATCAAGACAGAAGATCGATTTCTTTCGTGCTAAGATGCAAGAACTGGTTGATGCTTTAGCTAAGAAGTATGAAGAG AAATACAAGCAGGCTGGAGATGTAGCCTCTAAGTTAACAATTGAGGAGGCCACCTTTCGTGACATTCAGGAGCAAAAAATGGAACTCTACCGGGCAATTG TCAAAATGGATGAAGGAGAGACTGATAATGGTGCCCTTAAGGAGCGAGCGGAGCGTATTCATTCTAGTCTAGAAGAACTAGTGAGAAGTTTGAATGAACG ATGCAAACAGTATGGACTGCGTGCTAAACCTATGTCACTGGTTGAGCTTCCGTTTGGCTGGCAGGCAGGAATACAAGGAGGAGCAGCTGACTGGGATGAA CATTGGGATAAGTTTGAAGATGAAGGATTTACGTTTGTCAAAGAGTTGACTACGGAAGTGCAGAATATCGTGGCTCCGCCAAAACCAAAATCAATTCGAA ATGTGAAAGCTCTAATGGAAGGGGGTTTGAGCTTTTCTACATCTAATGCTGATGCGAAGGTGGAGAAGATTTCAGGTACAGGTGACCCAGTTCCAGATAA AGAATCAGCACACAGTGAAACTGAGAATGGTAGGGAAAGAAGCCCTCCTGGAAGTCCTAAAAACGGCAGAACAGAAAACCAAACTCGTGAATTCCAGGAT TCACCCAAAGGGAATGCTGGCAGGGATGGTTCACCGCATGGCAGGGGAACTTCAAGTGGCTTGTGCAGTGATGTGGCTGATACTGCTAGTGTATTTTCTG CTGATAAAAATGTTGATGAAGCTACATGGGGTAGATTTGACAGCCATTATGATAATGAGTCAATTTGGGGAACCGAATCCGCAGGTGGCAAGTCTGGAGT TGTTCTCGTGCAGGAAGCTGATCTAGAGAGCCATACAGACGGTTCTTTATTTGGCACTGGTGAATTCGGCCTGAATCCAATAAAGACAGGAACCTCAAAG GCGGACAATACCTTCTCAGGGAAGAGTTCGTTCATGTTTGATTCAGTACCAAGCAGCCCCGCTTATAACCAGGGGAATAGCTTTTATACGTTTGATTCTA TTCCTAGTACACCTGCTTATAACCAGGAAAAGAGCTCATTTGGCTTTGATTCTGTACCTGGAACCCCTGCATATAACCAAGGGAAAAGCTCTATTGTGTT TGATTCTGTACCAAGCACCCCAGCCCATGGCCAGGGAATGAGCTCTTTTGGATTTGCGGACTCTGTTCCAGGCACCCCTTCGTATGGCCTTGGTGGGAAA GGACCATTCTCGTTTGCTGATTCTGTCCCAGGCACTCCTGCCTACGATTTTGGCAACTCTCGAAGACTCAGTGAAGGCTCAGACGATCACTCCTTTGACA ACTTCTCCAGGTTTGATTCATTTAATTTGAATGAAAGCAGCAGCAGCTCATTCCCTTCTTCAGGGCCTTCTCTTGCAAGGTTTGATTCTGTGAGGAGCAC GAGAGAATCCGAACAAGGGTTCGGGGCACCGTCAAGGTTTGATTCATTTAGAGAGTCTGGAGACTCGGATCTTGGTCAGGGTTTCTCAAGGTTTGACTCA TTCAGGGACTCTGAGCAGAGTCATGTCCTTCCGAGTTTCGATTCTTTTGACAATGGTCAAGGATTCCCTTCAAGGTTCGATTCTTTCAGAGATTCTGGAG ATTCGGATAACGGACGGGGTTTTACAAGGTTTGATTCATTTGGTGGTCAGAGCTCTGGATTTGATTATGGGCATGACTCAAAGGACTCTTTGAACAAGCA CGGGTTTGATGATACGGATGCATTTGGGTCGAGTGGACCGCATAGAACATCAACGTTTGACGGTGGTGCTACTACAAAGAGTAGTTCCGATGAGTGGAAA GCCTTCTAG
AA sequence Show only first row Show all	>Lus10016689 pacid=23149135 polypeptide=Lus10016689 locus=Lus10016689.g ID=Lus10016689.BGIv1.0 annot-version=v1.0 MSGQNPSVDLFDAYFKRADLDGDGQISGAEAVAFFQSSGLPKQVLAQVWMYADQRKAGYLGRQEFYNALKLVTVAQSKRDLTPDIVRAALYGPASSKIPA PQINLAATPAPKVAASVSQFVGSTSAPSQNVGIRPTQLPAQANQQFLPSPQNQFVRPLQAMPPNSTSQQHQNFPRPGINSGAPPATRSLGSGISTDWLSG SMSAPTSQPPNQGIPPPARQDGVVPSASSMTTSVQTRPLVPTGQIPSSQPQAQDPDIFSKTPVANDSKSFAVLENGFNSGSSFGNVFSATPNQSNKISSS VAAAVNSSAAPQISVQPSPLGSFPNNAQQLVGGQQTGKQIQSVAGQVTNPRPSGGFPVAAGNVTSGQSRSLWPRMIPADIQKYLKVFVQVDTDRDGKITG EQARNLFLSWRLPREVLKQVWDLSDHDNDSMLSAKEFCVALYLMERYREGRPLPPTLPSSVISDEALVSATSRPTGSYGGGAWGPVPGPRQQQVGAGTRP LQPGAPRPPRPPSGPHSEEKQPSQPKPKVPVLEKHLVDQLTQEEQDSLNSKFQDASQADKKADVEVEELEKEILESRQKIDFFRAKMQELVDALAKKYEE KYKQAGDVASKLTIEEATFRDIQEQKMELYRAIVKMDEGETDNGALKERAERIHSSLEELVRSLNERCKQYGLRAKPMSLVELPFGWQAGIQGGAADWDE HWDKFEDEGFTFVKELTTEVQNIVAPPKPKSIRNVKALMEGGLSFSTSNADAKVEKISGTGDPVPDKESAHSETENGRERSPPGSPKNGRTENQTREFQD SPKGNAGRDGSPHGRGTSSGLCSDVADTASVFSADKNVDEATWGRFDSHYDNESIWGTESAGGKSGVVLVQEADLESHTDGSLFGTGEFGLNPIKTGTSK ADNTFSGKSSFMFDSVPSSPAYNQGNSFYTFDSIPSTPAYNQEKSSFGFDSVPGTPAYNQGKSSIVFDSVPSTPAHGQGMSSFGFADSVPGTPSYGLGGK GPFSFADSVPGTPAYDFGNSRRLSEGSDDHSFDNFSRFDSFNLNESSSSSFPSSGPSLARFDSVRSTRESEQGFGAPSRFDSFRESGDSDLGQGFSRFDS FRDSEQSHVLPSFDSFDNGQGFPSRFDSFRDSGDSDNGRGFTRFDSFGGQSSGFDYGHDSKDSLNKHGFDDTDAFGSSGPHRTSTFDGGATTKSSSDEWK AF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21630			Calcium-binding EF hand family...		Lus10016689 [exp]	0	1
AT1G20760			Calcium-binding EF hand family...		Lus10012248 [exp]	1.0	0.9527
AT1G21630			Calcium-binding EF hand family...		Lus10035983 [exp]	1.4	0.9470
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Lus10040449 [exp]	1.7	0.9359
AT1G14100		FUT8	fucosyltransferase 8 (.1)		Lus10041641 [exp]	2.0	0.9291
AT5G17910			unknown protein		Lus10020367 [exp]	6.0	0.9157
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10001306 [exp]	7.3	0.8996
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10010209 [exp]	7.4	0.9278
AT2G47500			P-loop nucleoside triphosphate...		Lus10010302 [exp]	7.4	0.9160
AT2G29620			unknown protein		Lus10009543 [exp]	11.4	0.9154
AT5G19390			Rho GTPase activation protein ...		Lus10036048 [exp]	11.5	0.9223

Compare expression of checked genes

Lus10016689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.