Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17530 662 / 0 Protein kinase superfamily protein (.1.2.3) AT4G35500 657 / 0 Protein kinase superfamily protein (.1.2) AT5G22840 474 / 3e-164 Protein kinase superfamily protein (.1) AT3G53030 268 / 4e-84 SRPK4 ser/arg-rich protein kinase 4 (.1) AT3G44850 255 / 3e-79 Protein kinase superfamily protein (.1) AT4G32660 148 / 4e-40 AME3 Protein kinase superfamily protein (.1.2.3) AT4G24740 145 / 9e-39 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT3G53570 144 / 3e-38 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT5G35980 92 / 9e-20 YAK1 yeast YAK1-related gene 1 (.1.2) AT1G73460 92 / 1e-19 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035984 [exp] 832 / 0 AT4G35500 694 / 0.0 Protein kinase superfamily protein (.1.2) Lus10005364 [exp] 459 / 6e-159 AT3G53030 653 / 0.0 ser/arg-rich protein kinase 4 (.1) Lus10020516 [exp] 454 / 8e-157 AT3G53030 647 / 0.0 ser/arg-rich protein kinase 4 (.1) Lus10005363 [exp] 251 / 2e-77 AT3G44850 681 / 0.0 Protein kinase superfamily protein (.1) Lus10020515 [exp] 248 / 2e-76 AT5G22840 684 / 0.0 Protein kinase superfamily protein (.1) Lus10019458 [exp] 148 / 7e-40 AT4G24740 729 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10036878 [exp] 147 / 1e-39 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10043309 [exp] 147 / 2e-39 AT4G24740 730 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10024431 [exp] 146 / 6e-39 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G063100 [exp] 710 / 0 AT2G17530 679 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G102100 [exp] 702 / 0 AT2G17530 703 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.006G117800 [exp] 487 / 4e-169 AT3G53030 740 / 0.0 ser/arg-rich protein kinase 4 (.1) Potri.004G190400 [exp] 259 / 7e-81 AT3G44850 769 / 0.0 Protein kinase superfamily protein (.1) Potri.009G151500 [exp] 254 / 9e-79 AT3G44850 735 / 0.0 Protein kinase superfamily protein (.1) Potri.015G085700 [exp] 151 / 6e-41 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.012G089700 [exp] 147 / 1e-39 AT4G24740 744 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.006G244400 [exp] 146 / 2e-39 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G079900 [exp] 143 / 5e-38 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.006G213400 [exp] 139 / 8e-37 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10016690 pacid=23149157 polypeptide=Lus10016690 locus=Lus10016690.g ID=Lus10016690.BGIv1.0 annot-version=v1.0 ATGTCTTGTTCGTCGTCATCTGCTTCCGATGAGGACGAGGGTATCGACTCTTACAGAAAAGGAGGTTATCATGCTGTTAGAATTGGCGACCCTTTCAACG CAGGTCGTTACATAGCCCAAAGAAAACTCGGTTGGGGTCAATTCTCCACCGTCTGGCTCGCTTACGACACCCAATCCTTTGATTATGTTGCTCTTAAGAT TCAGAAAAGTGCAGCACCATTTGCACAAGCTGCTGTTCACGAGATTGAAGTCCTTTCAGCCATAGCCAATGGTGACTCCTCCAATTCCAAATGTGTTGTT CGACTGATTGACCAATTCAAGCATTCAGGGCCAAATGGTCAGCATCAGTGCATGGTTCTTAAGTTTCTTGGCGACAGTATGCTCAGGCTAATCAAATACA ATCACTACAAAGGTCTCCACTTGAGTAAAGTTAGAGAAATTTGTAAATGCATTCTCATAGGTCTGGATTACTTACATAGAGAACTTGGCATACTCCACAC TGACCTCAAACCTGAAAACATTCTACTTTCTTCCACCATCGATCCGGCTAAGGATCCCGTCAAGTCTGGAGTGGCACCCATTCTTAAAAGACCTGAGGGA AACCTTAACGGTGGATCTACAATGAATATCATCGAGAAGAAGTTGAAAAGAAGAGCCAGAAGGGCAGTTGCCAATATATCAGAGCGGAGGAGTTCCATGG GAGGTCCAACACAAAAAACAAAGAGAAACTTGGATGGGATTGATTTGAGTTGTAAGGTTGTCGATTTCGGAAACGCATGTTGGGCTGCTAAGCCATTAGC AGAAGAGATCCAAACACGCCAATATAGAGCTCCTGAAGTCATTCTTCGGTCAGGATATTCCTTCTCTGTTGATATGTGGTCATTTGCATGTACTGCCTTT GAGCTTGCTACTGGAGACATGTTGTTTGCTCCTAAAGGTGGTCAAGGATTCTGCGAGGATGAGGATCACCTTGCTCTAATGATGGAACTTCTTGGAAAGA TGCCTCGAAAGATAGCAACTGGAGGAGTTAGATCAAAAGATCTATTTGACAGGCATGGTGACTTAAAAAGGATTAGGAGGCTCAAATACTGGCCGTTGAA TCGATTATTGGTGGATAGGTACAAATTTGCAGAGAATGAAGCTCGAGAGTTTTCAGAATTTTTATGTCCGATTCTTGATTTTGCACCAGAGAAGCGGCCC ACTGCTCAGCAGTGCCTACAACATCCATGGATGAACCTCACAATCTCAACTAATAAGAATATGGAAATGAGAAATAATGAAGTTTCGGTGGGAAAGTTGG GAGCAGGAATTAGCAGCCTACATCTCAAGGTGGGAAAGTGA
AA sequence Show only first row Show all	>Lus10016690 pacid=23149157 polypeptide=Lus10016690 locus=Lus10016690.g ID=Lus10016690.BGIv1.0 annot-version=v1.0 MSCSSSSASDEDEGIDSYRKGGYHAVRIGDPFNAGRYIAQRKLGWGQFSTVWLAYDTQSFDYVALKIQKSAAPFAQAAVHEIEVLSAIANGDSSNSKCVV RLIDQFKHSGPNGQHQCMVLKFLGDSMLRLIKYNHYKGLHLSKVREICKCILIGLDYLHRELGILHTDLKPENILLSSTIDPAKDPVKSGVAPILKRPEG NLNGGSTMNIIEKKLKRRARRAVANISERRSSMGGPTQKTKRNLDGIDLSCKVVDFGNACWAAKPLAEEIQTRQYRAPEVILRSGYSFSVDMWSFACTAF ELATGDMLFAPKGGQGFCEDEDHLALMMELLGKMPRKIATGGVRSKDLFDRHGDLKRIRRLKYWPLNRLLVDRYKFAENEAREFSEFLCPILDFAPEKRP TAQQCLQHPWMNLTISTNKNMEMRNNEVSVGKLGAGISSLHLKVGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35500			Protein kinase superfamily pro...		Lus10016690 [exp]	0	1
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10029930 [exp]	1.7	1.0000
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014217 [exp]	3.6	1.0000
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020731 [exp]	5.5	1.0000
					Lus10020426 [exp]	6.0	1.0000
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	7.1	1.0000
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10039345 [exp]	7.4	1.0000
AT5G14760		AO	L-aspartate oxidase (.1)		Lus10018901 [exp]	7.5	1.0000
					Lus10023520 [exp]	7.5	1.0000
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10026354 [exp]	8.2	1.0000
					Lus10010840 [exp]	9.4	1.0000

Compare expression of checked genes

Lus10016690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.