Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35520 347 / 2e-100 MLH3, ATMLH3 MUTL protein homolog 3 (.1) AT4G09140 86 / 1e-16 ATMLH1 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) AT4G02460 84 / 6e-16 PMS1 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035985 [exp] 2464 / 0 AT4G35520 354 / 1e-102 MUTL protein homolog 3 (.1) Lus10030376 [exp] 95 / 2e-19 AT4G02460 963 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Lus10007866 [exp] 89 / 2e-17 AT4G02460 763 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Lus10033274 [exp] 81 / 7e-15 AT4G09140 1066 / 0.0 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) Lus10034734 [exp] 78 / 4e-14 AT4G09140 504 / 3e-167 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G101900 [exp] 464 / 6e-142 AT4G35520 763 / 0.0 MUTL protein homolog 3 (.1) Potri.014G130800 [exp] 92 / 1e-18 AT4G02460 936 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Potri.019G078700 [exp] 84 / 5e-16 AT4G09140 1071 / 0.0 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08676 [flax] [poplar] MutL_C MutL C terminal dimerisation domain CL0329 [flax] [poplar] S5 PF01119 [flax] [poplar] DNA_mis_repair DNA mismatch repair protein, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016691 pacid=23149109 polypeptide=Lus10016691 locus=Lus10016691.g ID=Lus10016691.BGIv1.0 annot-version=v1.0 ATGAGGGGCATAGAACCATTGCCGGTTCCACTCCGCAATTCAATTCGCTCTGGAGTTATTGTGTTCGACTTGACAAGGGTTGTGGAGGAGCTCCTCTTCA ACAGTTTGGATGCTTCTGCTACTAAGGATGGGTATTTCGCTTTTCAGGTTTCCGTCTTTGTCGGTGCTGAGACTGGTTGTGTTAAAGTGATGGACAATGG TTCTGGAATCTCTAGGGATGGATTGATCTTGTTGGGTGAAAGATATGTTACGTCAAAGCTTTGTAGTGACACCTTTGGATTCCGAGGAGAAACGTTGGCT TCAATCTCTGATGTCTCGTCATTGGAAATTGTAACAAGAACCTGTGGAAGACCAAATGGTTATCGGAAGGTCATAAAGGGATCTAAGTGCTTATATTTTG GAATTGACGATAAAAGAAAAGATGTTGGCACAACAGTTGTTGTTCGGGATTTGTTTTACAACCAGCCTGTGAGGAGAAAATTTATTCAGTCCAGTTCTAA GAAGGTATTGCAGTCCGTCAAAAAATGTGTCCTTCGAGTTGCTCTTGTCCACTCGAGGGTCTCCTTTCAAATCATTGATATTGAAAGTGAGAAAGAACTC CTCTCCACTTATCGCTCTTCTGCCATGTCAATTTTGATGAGTGACTATGGGATTGATGAAGTCAACTGTCTTCATAAGCTCGATTTTAGCGATGGTTTCT TAAGCCTCTCAGGCTACATAACTCGTCCTTCTGAGGATTTTTCTGCAAAGACCTTCACAATATCAGACATCAACTCACGGTTTGTCTTCAAAGGACCAAT TCACAAGTTGCTTAATCACTTGGCCATGACGTTTGAAGTTCTGGATTCATGGGGTGCAATTTCTGGAAAAGGGAAGAGAAGCCGAGCTCAAGTATGCATA GCCTACATAATGAATTTATATTGCCCAAGAAACCTTTATGATCTAACTCTTGAGCCATCAAAGACTTATGCTGATTTCAAGGATTGGGGTCCCATTCTTA CCTTTATTCAGAAGGCCGTTCAACAAGTGTGGAGCAAGATTCGTGCTGGAGAACACTCAAGTCACAGAGTAGACCTTCACAGTACACTCTGGAAGAGAAA TGATGATTTGATGTCCAAAAAGGAAGGCCACGATTTGGATGTAGTTTTGCCAGAGACGTCAGAGGTTGCGAGTGACAAATTTCAAAGACCACAATATCAC ATTGCTTATTCTCCTGTTGGATATCTGAAGAAGCATCCTGATGAAACTTTTAATGGGGGCTATAACAACAAAGCTACATATGAAGAATTTGAAGTGGATT TTTCTGAGTTAAAAGAGCAACAAGTAGAAACAAGATATCCTTACCAGAGTGGCTTTTCAATGCTAGATGTAGCTGATTGTGGAAATATACCTCGGGGGAC CCTAGCGTGTAACAGTAATCTTCTTGCATCACATAACAGTTTTGACCTTCCTGACGATATCCTTGAAGAGAGACATGATATAATGCCAACGTACAGTGGT GACTTGGCCGGAACTCAACTAACTTCAGTCTGGCAGAATGACTCCTCTAAAATTGAGTCAGCTAAGATGGAATTCTCTTCAGATCATGAAACATGGAGAA AACAACTAGAGACTAGTGTGAGTGGCAACAACCGCTACAGGAGTGATAGTGATTTTACATTACAAGAATTTGAAGTGGATGTTTCTGATTTCAATGATGA AGTAGAAATGAGATGTGCCTACCAAAGTGGCTTCTCAATGCGATCCAAGGATGTTATGGACCAGGACTACTGCTCTCCTCTTTTCACATCTCGTAACAGT TTCGAGTTTTTAGATGACAAATTCATCGAAGATAGAGATAACATCAGACAGAAATACAGTGATGACATCGAGGGAAATCCCTTAAGCTCCGACTGGCAAA ATGAGTTCCCCGAAGATGAGTCAGGTAACATTACTTTATCTTCAGATCATGAGATATGGGATACACAACTGAGGTTTGGTGATAGGGGCAGAGTTCCTTT TTTGCATGGATGCTCATTTAGCCCGTCGAGTAACAAGGGTTTGCTAAATTGTCAGGAAGAAGCAGAACATCCAATTTCAGAATCCCACTATCCTGATGAC AAATTCGTAGAAGATACACATAACGACAAACATAAATACAATGATGACCTAGATGGAAATCTTGTAAGCTCAGACTGGATTAATGAGTACCTTAATGATG GCTCAGCCAACAATATTTCATCTTCAAATAATGAAGTGTGGAGTAAACAGCTGAAGATTGGTGAAAGTGCGAAAGACCATTTCTTCCGTGGTCGCATACT AACGAGAAGCCTGTCAGGTAAGGGTCTGCTAAATTGCGAGGAAGAAACTGAAGTCACAATTGTGGAACCCCTGGTTAAAAGGAGGCGGGTTTGCTTCAAT AAAAACGTAGATGTAATAGAAGATGAGATTAATAATCAGAGGGATGATATCCTTTTTGGGCAGGGGGAGCAGACTTTTACTCAAGGTACGGAACCTCAAT CTGATTTTGTCCCACATACGGGGGGGAGTATTTCATCAGGAAATAAATTCCCTAGGTCCAACTGCGATTCAGAAACTTCAGATTCCTTATTTGAGGCCTG TTGGGGCGTTGAGAACTTCCCCCAGGATGTAAATGGGAAAAACCATTGTCATCTAGTTGGCACCAAGAAGACTCAGTTGTTATCCTTACATCAGCCTCAC ATGTCACGAGATAAGGTGGACTGGTTACAGTTAGACTTGCCGTCCCATGATCAAAATAGTTATGATAAATACAGTGAGAAATGGGATAAAGTAGGATATC GAAGTGGGAAGAAAGATCTCATAGGCAACTACTCCAGAAGAAGCCATTCAGCTCCACCATTCTATAAGCAGAAGAAGTTTATTTCCTTGAATGGTTCTCT CTCAGTAGGAAGAAAACCTCAGGCTCATGTTGTGCATGATCAGGAGAACAAAATTACTTATCTTGAACCAAATAGCATCCGAGCACTGAATTCAACTGCC AGACCAGAAATGAAGCATGAACAGAGTACCGTGCCACCAATTGAAGAGGGTCTAGAAGTAAAAATGGTTGCGCAACAATGCACAGTGGGTCATAATTCTG CCGAGAGATCGAGCATTTCACCAAGTGGAAGCAGAGAGGTCGAGCATTTCACCAAGTGGACGAATTGTGCACAAGAGAACAGAAAAGCATGTGATGGTGA CAGTCATCGCAGCATACTTGACATAACTTCGGAGTTCTCAAGTCTGACTGGCAGTGTACTTATTCCAGAATCACTGCGTACAAATTTTCTTAAGCAGGCT AAGGTTCTTCAGCAAGTGGATAAAAAGTTCATTCCAGTGGTTGCTGATGGGACACTCGCTGTTATAGACCAGCATGCAGCGGATGAAAGGATTCAACTGG AGGAACTCCGAGACAAGGTATTAACTGGAAATGCAAGGACAATATCCTATCTAGATGCTGAACAGGAGCTGATCCTTCCAGAGTTTGGATATCAGCTTCT TGCTGATTATGCTGATCAAGTAAGAGACTGGGGATGGATCTGCAACATGCGGCCTCAAAGTTCAGGGACATTTAATAAGAACTTGAATGTCATGCACCAA CATAGGGCAATGGTGACACTAATTGCGGTACCCTGCATTTTAGGAGTAAAATTGTATGGTGGAGATCTACTGGAATTTCTTGAGCAGCTTGCTGATACTG ATGGTGCGTCAACCGTACCGCCATGTGTTGTGCGAATCCTGAATCTTAAAGCATGCAGAGGTGCGATCATGTTTGGCGATTCCTTGCTGCCATCGGAATG TGCTCTAATCGTGGAAGAGCTGGAGAAGACTGAACTCTGTTTTCAATGCGCTCATGGTCGACCCACAACTGTGCCTCTGGTCAACTTAGCTACATTGCAC CGTGAGATTGCCGCTTTGATGAAGAACGATGATTCTGTTGTAAGACGGCAGCAGATCGGGATCAGTAGAGCGCTGCAGCGTTTAAATGCTGCTGGAGATA TGCAACCAAACACAGTAAAGTAG
AA sequence Show only first row Show all	>Lus10016691 pacid=23149109 polypeptide=Lus10016691 locus=Lus10016691.g ID=Lus10016691.BGIv1.0 annot-version=v1.0 MRGIEPLPVPLRNSIRSGVIVFDLTRVVEELLFNSLDASATKDGYFAFQVSVFVGAETGCVKVMDNGSGISRDGLILLGERYVTSKLCSDTFGFRGETLA SISDVSSLEIVTRTCGRPNGYRKVIKGSKCLYFGIDDKRKDVGTTVVVRDLFYNQPVRRKFIQSSSKKVLQSVKKCVLRVALVHSRVSFQIIDIESEKEL LSTYRSSAMSILMSDYGIDEVNCLHKLDFSDGFLSLSGYITRPSEDFSAKTFTISDINSRFVFKGPIHKLLNHLAMTFEVLDSWGAISGKGKRSRAQVCI AYIMNLYCPRNLYDLTLEPSKTYADFKDWGPILTFIQKAVQQVWSKIRAGEHSSHRVDLHSTLWKRNDDLMSKKEGHDLDVVLPETSEVASDKFQRPQYH IAYSPVGYLKKHPDETFNGGYNNKATYEEFEVDFSELKEQQVETRYPYQSGFSMLDVADCGNIPRGTLACNSNLLASHNSFDLPDDILEERHDIMPTYSG DLAGTQLTSVWQNDSSKIESAKMEFSSDHETWRKQLETSVSGNNRYRSDSDFTLQEFEVDVSDFNDEVEMRCAYQSGFSMRSKDVMDQDYCSPLFTSRNS FEFLDDKFIEDRDNIRQKYSDDIEGNPLSSDWQNEFPEDESGNITLSSDHEIWDTQLRFGDRGRVPFLHGCSFSPSSNKGLLNCQEEAEHPISESHYPDD KFVEDTHNDKHKYNDDLDGNLVSSDWINEYLNDGSANNISSSNNEVWSKQLKIGESAKDHFFRGRILTRSLSGKGLLNCEEETEVTIVEPLVKRRRVCFN KNVDVIEDEINNQRDDILFGQGEQTFTQGTEPQSDFVPHTGGSISSGNKFPRSNCDSETSDSLFEACWGVENFPQDVNGKNHCHLVGTKKTQLLSLHQPH MSRDKVDWLQLDLPSHDQNSYDKYSEKWDKVGYRSGKKDLIGNYSRRSHSAPPFYKQKKFISLNGSLSVGRKPQAHVVHDQENKITYLEPNSIRALNSTA RPEMKHEQSTVPPIEEGLEVKMVAQQCTVGHNSAERSSISPSGSREVEHFTKWTNCAQENRKACDGDSHRSILDITSEFSSLTGSVLIPESLRTNFLKQA KVLQQVDKKFIPVVADGTLAVIDQHAADERIQLEELRDKVLTGNARTISYLDAEQELILPEFGYQLLADYADQVRDWGWICNMRPQSSGTFNKNLNVMHQ HRAMVTLIAVPCILGVKLYGGDLLEFLEQLADTDGASTVPPCVVRILNLKACRGAIMFGDSLLPSECALIVEELEKTELCFQCAHGRPTTVPLVNLATLH REIAALMKNDDSVVRRQQIGISRALQRLNAAGDMQPNTVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10016691 [exp]	0	1
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	3.3	0.8413
AT1G06710			Tetratricopeptide repeat (TPR)...		Lus10026747 [exp]	6.5	0.7762
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10022923 [exp]	7.2	0.7974
AT5G52950			unknown protein		Lus10039318 [exp]	8.5	0.7882
AT1G76630			Tetratricopeptide repeat (TPR)...		Lus10025170 [exp]	8.7	0.7912
AT5G08110			nucleic acid binding;ATP-depen...		Lus10007978 [exp]	11.4	0.7896
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10033066 [exp]	13.5	0.7769
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10036700 [exp]	14.4	0.7874
AT5G51540			Zincin-like metalloproteases f...		Lus10031715 [exp]	15.5	0.7843
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10039160 [exp]	20.4	0.7487

Compare expression of checked genes

Lus10016691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.