Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10620 461 / 6e-159 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G57180 276 / 2e-86 BPG2 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G47450 67 / 6e-12 RIF1, ATNOA1, ATNOS1, NOS1 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G41670 45 / 9e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035986 [exp] 640 / 0 AT4G10620 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000122 [exp] 444 / 1e-157 AT4G10620 346 / 9e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031030 [exp] 300 / 2e-95 AT3G57180 731 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035420 [exp] 299 / 3e-95 AT3G57180 732 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031160 [exp] 60 / 2e-09 AT3G47450 719 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10031736 [exp] 49 / 4e-06 AT3G47450 622 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G010400 [exp] 489 / 3e-170 AT4G10620 695 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G044700 [exp] 289 / 3e-91 AT3G57180 750 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G124900 [exp] 72 / 2e-13 AT3G47450 727 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016692 pacid=23149125 polypeptide=Lus10016692 locus=Lus10016692.g ID=Lus10016692.BGIv1.0 annot-version=v1.0 ATGGTAATTTCTCGAAGCCTTTCGGTCGCAAAATCAAAGCTTAAGCCCCTCTTCTCCCTTTCTCGCTTCTCCCAAGCTCTGCAATACTCTCCTTCTATAC CACCAGCTCCTTCATCTGCCACCTCCTCTTCTCCTTTCACTCCATCGACGGTGGTCCTATTGGTTGTGGATGCTTCCGATTTCGACGGGTCATTTCCAAA AAGGCTAGCTACGCTGGTTACTGAGGCAATTGATGAGAACTATACCAACTGGAAAGAAGGGAAATCTGGGAATGATTGGGTTAGGCAGAGAGCTAGGGAT GGTGGTGCTGCTGTTATTAAGAAAGTTCATTTTGTGAGTCCTGTTAAGAATTGGGGGCTGAAGGATTTGGTGGAGGACGTCAAAGAATTGGCAGGGGCGA GAGGACATGTATGGGCTGTTGGAATGCAGAATGCAGGAAAGAGTACTTTGTTAAATGCAATGGCCAAGTGTACTGCTGGTGGAGGAGGAGTTCAACCAAA GATTACTCATTTGACAGAGGCGCCTGTGCCTGGGACAACTCTTGGTATAATCAGAGTCGACGGTCTTCTTCCTGGAAACACAAAGGTGTTTGACACTCCT GGACTTCTGAACCCGAATCAGATTACAACTCGGTTAACTAGGGATGAGCAGAAGCTTGTTAACATTACCAAGGAGTTGAAACCAAGGACTTACAGAATCA AGGAAGGTCACTCAGTTCACATGGGTGGGCTTATGAGGGTAGACATTGAACAACTATCAGTGGACTCCGTATATGTAACGGCGTGGGCATCACCGTATCT TCCACTGCACATGGGGAAAACTGAAAACGTGGGCAATATGCTTGAAGAACATTTTGGCCGTCAGTTACAGCCTCCAATTGGGGAAACACGAGTTGAAGAA CTTGGAAAATGGGTGAGACACGAGTTCCATGTATCTGGGAATAGTTGGGCTTCAAGTTGTGTAGATATTGCTGCTGGAGGCCTGGGTTGGTTCGGCATCG GACTTAAAGGAGATGCAGTTGTAGGTGTTTGGACATATGAAGGAGTTGATGTGGTCCTTAGGAACTCATTGATTCCTTATAGGGCAGAAACATTTGAAGT TGCAGGTTTTACAGTCTCAAAAATTGTGTCGAAAGCTGACCAAACTTTAAACAGACCAAAAAGTAAAAGTGAAAAGAAGAAGAAGAAGCACAGCCAAGGA ATACACGTTGTAGCTGCTGATGCAGTTTGA
AA sequence Show only first row Show all	>Lus10016692 pacid=23149125 polypeptide=Lus10016692 locus=Lus10016692.g ID=Lus10016692.BGIv1.0 annot-version=v1.0 MVISRSLSVAKSKLKPLFSLSRFSQALQYSPSIPPAPSSATSSSPFTPSTVVLLVVDASDFDGSFPKRLATLVTEAIDENYTNWKEGKSGNDWVRQRARD GGAAVIKKVHFVSPVKNWGLKDLVEDVKELAGARGHVWAVGMQNAGKSTLLNAMAKCTAGGGGVQPKITHLTEAPVPGTTLGIIRVDGLLPGNTKVFDTP GLLNPNQITTRLTRDEQKLVNITKELKPRTYRIKEGHSVHMGGLMRVDIEQLSVDSVYVTAWASPYLPLHMGKTENVGNMLEEHFGRQLQPPIGETRVEE LGKWVRHEFHVSGNSWASSCVDIAAGGLGWFGIGLKGDAVVGVWTYEGVDVVLRNSLIPYRAETFEVAGFTVSKIVSKADQTLNRPKSKSEKKKKKHSQG IHVVAADAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10620			P-loop containing nucleoside t...		Lus10016692 [exp]	0	1
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Lus10015861 [exp]	5.5	0.8325
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10038839 [exp]	6.0	0.8222
AT4G15820			unknown protein		Lus10034169 [exp]	6.9	0.7853
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10003667 [exp]	8.5	0.8211
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10013341 [exp]	15.5	0.8010
AT3G46870			Pentatricopeptide repeat (PPR)...		Lus10016476 [exp]	15.8	0.7865
AT1G72040			P-loop containing nucleoside t...		Lus10016950 [exp]	16.4	0.8106
AT1G77405			Pentatricopeptide repeat (PPR)...		Lus10029697 [exp]	20.0	0.7974
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10039594 [exp]	20.4	0.7965
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10039703 [exp]	23.2	0.7799

Compare expression of checked genes

Lus10016692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.