Plant FIBer expression Database

Lus10016693 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G17550 315 / 8e-96 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035987
[exp]
1269 / 0 AT2G17550 345 / 3e-107 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G101700
[exp]
338 / 2e-103 AT2G17550 525 / 2e-174 unknown protein
PFAM info
Representative CDS sequence
>Lus10016693 pacid=23149045 polypeptide=Lus10016693 locus=Lus10016693.g ID=Lus10016693.BGIv1.0 annot-version=v1.0
ATGGCTAGGAAATTGAGAGGAGTGGAGGCTCCTAGAAATAGCTTGGATGTGCAAGTAGAAAATCGTCGATTCCGTGGGCTGCGTGTATTGGGTCATCAGC
AAGTTGAACAGGAGTGGACAGATGGAAGCTGCGATCCAACGAAAAGGTTAGTTAATGGAGACGACATGTATACTAGAAGTAGAAACATCAAGGAGGGTGG
TGCGCCTACACCTAGCATTGTCGCGCGTTTGATGGGTGTCGACGCTTTACCTCCACTGCTTCACCCAACCAGCTGGTCTCTTGAACAGGAAAAGACCTCA
TCTAGGAAGGACCAATTACTTGACCATTTCTACCCCAGAACCGAGTATGAGGAGGATTCATCAGATCAATGGTGTAACATTCAAACAATCCGAAGACAAC
ACCCTCAAGAGGAACAACTTGACAAGTTCAAAAGGGAATTTGAAGCCTGGCAAGCTTCCAGGTTCAAGCAATGTTCCAGTGTTGCTCAAATTGTTGCCAA
CATTGCTGGCCAGTTGGAACACAAGGAGGAGGACAGTACTGTTTCTTCAACATTTGGAAAACGCTTCATTGATGGTGGTTGTACTCCTAACAAAATAGTT
ATCTTGAAGCCTGGCCCTGATGACTGTCAAGATTCTTTGGCTACTAGTACTAGTTCCCCAGCCACTACTACTTCCGAGGATAGAGGCACCGCCAGCATTC
ACAACTTTCTCGAGGAGGTTAAACAACGGCTCAAGACTCAACTTGAAGGGACAAATTTTCAGAGAGATCAAATGCTGTCAGAGTACCCCAGCAAGCCAAG
TGTCTCCAGCTGGGACACTAACGCTAATTTGGTCCGTTCAGAATCCACAAGATCATCCAGACGTGATCAAATGCAGTACAATGGCACTGAATTCATGAAC
CGGAATGCAAGGAGATTCTTGTCGGAAAGACTGAGGAATATTATTGTAAGGAAGAGAACATCATCCCTTGATGTTCGTAGCAGTTCTGGATCGGATGATA
TTACAATGGAAGAAATGCAAACAAGATCGTTCAGACATGAAGAAGAAGAAGAGGATTTTGTAGGTGGCATCATGTCGTACAAAGAGCCGTCTCCTAGGAA
CTTAATGAGATCATTGTCAGCTCCTGTATCATTCGGGAAGCTTCTTTTAGAGGATCGTCACATCTTAACAGGAGCACACATCAGAAGGAAGCATGAAGAA
GCACTTGATACTGTTAGTGAGGATCAATTGAAAAACGGCAGGAAAGAAAGGTTTAATATCAAACAGAAAGTTTCCAGTTTCAGACACAATTTAAGTCTCA
GGGGGAAGAAGATGTTTCGCAAAAGGTTTCAGAGGGTGGAATCTTGCAATTATGGCAAGGATATTCACATTGTCAACAACACTACTAGGCACATGCCAAC
AGTTGTAAACATTGGGGAGAGACACAGAACCATAATGGAGAACTTGACTGAGGTGCCTCCAAGTCCAGCATCCATTTGCAGCAGTGCTCAAGAAGACTTG
TGGAGGCCATCAGATTATTATGTGAGCCCAGTTTCGACTCCTGATGTTACCCTGGAAGATGAAAGTGGCATGCCTCAAGTATTTAGGGATATATGCACCA
ATCTCAAAGAGCTGAGGAGGCAAATAAATCGACTGGGAACAACTGACGACGAGGAGGAGGAAACTGGTGCTGCATCATCAGTAGATTGTGGAGTAGAACA
CAGGGAGGAGGAGAATGTGAGATTGGATCCATCAGGGAGACGGATAGAAGAAAAAGCAGAAGCTTGTTACATCAGAGAATTGCTGATTGTTTCTGGGTTA
TTCGATGGGTCATCATCATCCACAGACGTGTCTGTACCCAGCAGCAGATGGGATCCGCTTGGAAAGCCAATTCCAAACTGGGTATTTGAACAAATGGAAG
AAGCATCACGTAAGAAATGGGACGAGGAGGGAAAAGATGGTGCTGAGACGAGAAGCGATATGGATAGGAAGATGTTGTATGACTTGTTGAATGAGGCATT
GACGACTGTGATCCCAGGTGGGCGGAGTACTAGTACTCGTACTAGTCTAAGGGGAACCAAATTGTTGGAGAGGGTGTGGAAGATGGTCCAGGAGTATGTC
GTATGTGATGTTATTCCTTATGGAAGTGATGTTAGTGTGGTGGAGAGACAAATGGGTTCAATCACCTCATGGTCATGTGGTGGGTTGAACTATGAGGATC
AAGGTTTGGATGAATTGGCTACAGAAATGCAGTTTCTCATAGTTGAAGACATCATCCAGGACACTCTCAAGGAACTCATATAA
AA sequence
>Lus10016693 pacid=23149045 polypeptide=Lus10016693 locus=Lus10016693.g ID=Lus10016693.BGIv1.0 annot-version=v1.0
MARKLRGVEAPRNSLDVQVENRRFRGLRVLGHQQVEQEWTDGSCDPTKRLVNGDDMYTRSRNIKEGGAPTPSIVARLMGVDALPPLLHPTSWSLEQEKTS
SRKDQLLDHFYPRTEYEEDSSDQWCNIQTIRRQHPQEEQLDKFKREFEAWQASRFKQCSSVAQIVANIAGQLEHKEEDSTVSSTFGKRFIDGGCTPNKIV
ILKPGPDDCQDSLATSTSSPATTTSEDRGTASIHNFLEEVKQRLKTQLEGTNFQRDQMLSEYPSKPSVSSWDTNANLVRSESTRSSRRDQMQYNGTEFMN
RNARRFLSERLRNIIVRKRTSSLDVRSSSGSDDITMEEMQTRSFRHEEEEEDFVGGIMSYKEPSPRNLMRSLSAPVSFGKLLLEDRHILTGAHIRRKHEE
ALDTVSEDQLKNGRKERFNIKQKVSSFRHNLSLRGKKMFRKRFQRVESCNYGKDIHIVNNTTRHMPTVVNIGERHRTIMENLTEVPPSPASICSSAQEDL
WRPSDYYVSPVSTPDVTLEDESGMPQVFRDICTNLKELRRQINRLGTTDDEEEETGAASSVDCGVEHREEENVRLDPSGRRIEEKAEACYIRELLIVSGL
FDGSSSSTDVSVPSSRWDPLGKPIPNWVFEQMEEASRKKWDEEGKDGAETRSDMDRKMLYDLLNEALTTVIPGGRSTSTRTSLRGTKLLERVWKMVQEYV
VCDVIPYGSDVSVVERQMGSITSWSCGGLNYEDQGLDELATEMQFLIVEDIIQDTLKELI

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G17550 unknown protein Lus10016693
[exp]
0 1
AT4G14350 AGC (cAMP-dependent, cGMP-depe... Lus10011814
[exp]
1.7 0.8663
AT1G33470 RNA-binding (RRM/RBD/RNP motif... Lus10039151
[exp]
3.2 0.8628
AT1G64760 O-Glycosyl hydrolases family 1... Lus10002633
[exp]
3.9 0.8342
AT5G14180 MPL1 Myzus persicae-induced lipase ... Lus10041571
[exp]
3.9 0.8187
AT5G63640 ENTH/VHS/GAT family protein (.... Lus10012506
[exp]
4.9 0.8242
AT2G23520 Pyridoxal phosphate (PLP)-depe... Lus10016776
[exp]
6.3 0.7940
AT1G78110 unknown protein Lus10012052
[exp]
8.0 0.7713
Lus10022013
[exp]
8.0 0.7957
AT1G78110 unknown protein Lus10027930
[exp]
8.1 0.7578
AT1G72880 Survival protein SurE-like pho... Lus10008390
[exp]
8.5 0.8163

Lus10016693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.