Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35510 94 / 3e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035988 [exp] 407 / 5e-144 AT4G35510 107 / 1e-26 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G063000 [exp] 189 / 2e-57 AT4G35510 66 / 7e-12 unknown protein Potri.005G102000 [exp] 162 / 4e-47 AT4G35510 58 / 3e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016694 pacid=23149096 polypeptide=Lus10016694 locus=Lus10016694.g ID=Lus10016694.BGIv1.0 annot-version=v1.0 ATGGATGCCAACATTTGCGACATCAATCACTTGGATGCGGATGTCCTTTTGCCCCCAAGAAAACGTCTGCTTGCTGGATTCAAGAAACAGACTTTTGATG CTGGTGGTGTTTTCTCTAATTACCCACTAGCACTTGCTTCTTCTTCATCTTCTGCAGCATCACTTTATCCCCACTCTCCGTCATCTCCATCCCCTCCTCC TTCGCCCCCTTCAACCCAGTTTCAGTGCCGGCTTGGTGACCTCATGAGTGGTCATTTCAACTGTCAGCGTAATCTTTCCCCTGAGCAGATTTTGGATGCC TCAAGATCGGCAGCAGATACTGCTCTAAAGGCCGCAGAGGCAGCTCGAGCTGCGGCCCAGGACAAGGCTGCTAATGCGGCAAAGGCTGTACTTGCCGCAA AGGAAGCATTAGCCCTGGTTGCGTCTTTCTCGGAGGAGGCAGTTACTGAGGAAAGAGTCATGGATGTGGAAAGGCACATAAGGAAGAATAAGCTGAAGAA GCATGTTCAGGTTCAGCTCTTGTACGAGAAACACCAACCTGTTGACTATCATGGCAAGAGGAATGATGAAGAACTAGCTCGCAGGTTGCATCGAGTTATG AACAGCTCCCCTCGCATTTCAAAGAACTCTCCCGAGGGTAAGGGACACAAGAATAAGAAGCTTAAGGGATCACCGGCAAAGGCTTCCAATGGCAGCAGTA TACTAGTCTTTGGTGAATCCCTGTGTGATGGCGGGCATGAAGTAGCCGGTCAATTGGAATCTGAGGAAGACAACTTGACAGGCGAGGCCAGCATAGATGA CGAGAGGATATCGAGAAATGGGAGTGGGAAGAGGACCCAAGTTGAGGTGGAGAACGAAGGTGATGCGGAGTCTTAA
AA sequence Show only first row Show all	>Lus10016694 pacid=23149096 polypeptide=Lus10016694 locus=Lus10016694.g ID=Lus10016694.BGIv1.0 annot-version=v1.0 MDANICDINHLDADVLLPPRKRLLAGFKKQTFDAGGVFSNYPLALASSSSSAASLYPHSPSSPSPPPSPPSTQFQCRLGDLMSGHFNCQRNLSPEQILDA SRSAADTALKAAEAARAAAQDKAANAAKAVLAAKEALALVASFSEEAVTEERVMDVERHIRKNKLKKHVQVQLLYEKHQPVDYHGKRNDEELARRLHRVM NSSPRISKNSPEGKGHKNKKLKGSPAKASNGSSILVFGESLCDGGHEVAGQLESEEDNLTGEASIDDERISRNGSGKRTQVEVENEGDAES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35510			unknown protein		Lus10016694 [exp]	0	1
AT5G57480			P-loop containing nucleoside t...		Lus10006968 [exp]	17.2	0.6174
AT5G57480			P-loop containing nucleoside t...		Lus10006967 [exp]	28.4	0.6129
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10007291 [exp]	30.6	0.6160

Compare expression of checked genes

Lus10016694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.