Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20693 87 / 5e-22 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) AT1G20696 83 / 2e-20 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3) AT2G17560 78 / 1e-18 NFD4, NFD04, HMGB4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4, high mobility group B4 (.1.2.3) AT3G51880 78 / 4e-18 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) AT4G35570 63 / 5e-13 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1) AT5G23420 43 / 3e-05 HMGB6 high-mobility group box 6 (.1.2) AT2G34450 41 / 0.0001 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035991 [exp] 182 / 1e-59 AT1G20693 117 / 8e-35 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10013219 [exp] 80 / 2e-19 AT1G20693 165 / 2e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10012250 [exp] 83 / 8e-19 AT1G20696 189 / 3e-59 high mobility group B3 (.1.2.3) Lus10027787 [exp] 75 / 9e-17 AT3G51880 132 / 2e-39 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10012252 [exp] 71 / 8e-16 AT1G20693 164 / 1e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016025 [exp] 71 / 2e-15 AT1G20693 192 / 7e-64 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10035511 [exp] 67 / 1e-13 AT3G51880 152 / 2e-46 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10030738 [exp] 66 / 1e-13 AT1G20693 185 / 7e-61 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10041009 [exp] 64 / 2e-12 AT5G23420 178 / 1e-55 high-mobility group box 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G101400 [exp] 107 / 9e-30 AT1G20696 112 / 2e-32 high mobility group B3 (.1.2.3) Potri.005G252600 [exp] 76 / 1e-17 AT1G20696 147 / 7e-46 high mobility group B3 (.1.2.3) Potri.002G009000 [exp] 65 / 2e-13 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.010G189900 [exp] 62 / 5e-12 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.008G067400 [exp] 59 / 4e-11 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.007G000900 [exp] 57 / 3e-10 AT5G23420 156 / 8e-48 high-mobility group box 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Lus10016695 pacid=23149041 polypeptide=Lus10016695 locus=Lus10016695.g ID=Lus10016695.BGIv1.0 annot-version=v1.0 ATGACTTCTGCTTCTTACTCGTATTTTGTTACAGGAATCGCCATGAAAGGAGGCAAGTCGAAGGTTGATACCAAGAAAACTGATGCAGCACTGAAGCCAA AAGGTGCTGGTAGATCCACTAAGAAAGCTGCGAAGGATCCAAACAAGCCGAAGAGGCCTCCCAGTGCTTTCTTCGTCTTCATGGCGGAGTTTAGGGAGCA GTTCAAGGAGCAGAATCCTAACAATAAGTCTGTTGCTGCTGACAAAGCTCCTTACAAGGCAAAGGCGGATAAAAAGAAATCCGAGTATGAGAAGACTATC ACTGCGTACAACAAGAAGCAGGCTGGGGAAAATGGTGATGATGAATCTGACAAGTCCAAATCTGAAGTAAACGACAATGATCATGAGAGTGGGGAGTATA ACCCACTCGAGAGGAAGAGTGGCTATTTGCAAGTTGTAATGGTGGTAGCTCTTGACATTGCAATGACAATCGGGCTGCTGCAGCTTCTTACTCTGTCGAA TCATTTTACTTTTAGTTGGTCTTCTGGCTTTTCCTGTACAAGCAAAGCTGTCCAGACGACACTGGGATCTTAG
AA sequence Show only first row Show all	>Lus10016695 pacid=23149041 polypeptide=Lus10016695 locus=Lus10016695.g ID=Lus10016695.BGIv1.0 annot-version=v1.0 MTSASYSYFVTGIAMKGGKSKVDTKKTDAALKPKGAGRSTKKAAKDPNKPKRPPSAFFVFMAEFREQFKEQNPNNKSVAADKAPYKAKADKKKSEYEKTI TAYNKKQAGENGDDESDKSKSEVNDNDHESGEYNPLERKSGYLQVVMVVALDIAMTIGLLQLLTLSNHFTFSWSSGFSCTSKAVQTTLGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10016695 [exp]	0	1
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10005874 [exp]	6.2	0.9112
AT4G18820			AAA-type ATPase family protein...		Lus10007316 [exp]	6.6	0.8486
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10036982 [exp]	7.1	0.9106
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10015820 [exp]	7.7	0.9102
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035991 [exp]	8.5	0.9064
AT4G12740			HhH-GPD base excision DNA repa...		Lus10001182 [exp]	10.0	0.8669
AT4G01270			RING/U-box superfamily protein...		Lus10018817 [exp]	11.4	0.9007
AT1G67180			zinc finger (C3HC4-type RING f...		Lus10034088 [exp]	13.8	0.8860
AT3G17030			Nucleic acid-binding proteins ...		Lus10016902 [exp]	14.1	0.8714
AT1G72090			Methylthiotransferase (.1)		Lus10016926 [exp]	15.1	0.8387

Compare expression of checked genes

Lus10016695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.