Plant FIBer expression Database

Lus10016696 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16444 155 / 2e-48 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035992
[exp]
139 / 3e-42 AT4G16444 87 / 5e-22 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G101300
[exp]
190 / 5e-62 AT4G16444 181 / 9e-59 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04420 CHD5 CHD5-like protein
Representative CDS sequence
>Lus10016696 pacid=23149065 polypeptide=Lus10016696 locus=Lus10016696.g ID=Lus10016696.BGIv1.0 annot-version=v1.0
ATGGAAGTCGACGAGGATCCTGTACAACAACGGAGGTCTTTCGTGGCTCCTCTCATATTCTCGGTCGTTGTACTGTTCCAGTTGGCATCGAGACGGTTCG
AGATCCTGAAGAGGAAAGCCTCTAAGAGCGAGAAGGAAATTCAGCTGCGTGCAGAAATAAAGCAACTCTACAAAGAGGCCAGCACCTTCTCACAGCCATC
GACGTTTGCTCAAGCAGCAAAACTCAGAAGGTCGGCAGCTGCTAAAGAGAAGGAACTTGCAAATTATCAAGAATCACAGGGCAATGAGGTGAAGATGTCA
TATGATTTGTACCTGAAGATAGTGTTTCTCTTAAAGGTGGGAACATATGTCGTGTTAGTTTGCTGGTTTTGGAAGGCTCCAATCGCAGTTGTATCTCAGC
AACTTGTGCAGCCATTCGGTAACGCTTTTCTTCCCTTTGGAAAGATATTATCCTGGACAGCGGGTGGACACTTGACTAACAATGTTGCGGTGGGTGTTAT
ACCATGGTTGATATTATGCACAAGAGTGAGCAAGGTTGTCGCTCGACTCGTCAAGTAG
AA sequence
>Lus10016696 pacid=23149065 polypeptide=Lus10016696 locus=Lus10016696.g ID=Lus10016696.BGIv1.0 annot-version=v1.0
MEVDEDPVQQRRSFVAPLIFSVVVLFQLASRRFEILKRKASKSEKEIQLRAEIKQLYKEASTFSQPSTFAQAAKLRRSAAAKEKELANYQESQGNEVKMS
YDLYLKIVFLLKVGTYVVLVCWFWKAPIAVVSQQLVQPFGNAFLPFGKILSWTAGGHLTNNVAVGVIPWLILCTRVSKVVARLVK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G16444 unknown protein Lus10016696
[exp]
0 1
AT4G32530 ATPase, F0/V0 complex, subunit... Lus10000347
[exp]
4.1 0.7511
AT5G52060 ATBAG1 BCL-2-associated athanogene 1 ... Lus10006328
[exp]
4.2 0.7331
AT2G45200 ATGOS12, GOS12 golgi snare 12 (.1.2) Lus10001986
[exp]
9.4 0.7051
AT1G50740 Transmembrane proteins 14C (.1... Lus10019624
[exp]
15.4 0.7294
AT5G16550 unknown protein Lus10033497
[exp]
17.9 0.6834
AT3G15810 Protein of unknown function (D... Lus10038097
[exp]
18.6 0.6959
AT4G08790 Nitrilase/cyanide hydratase an... Lus10030303
[exp]
21.4 0.6538
AT1G67570 Protein of unknown function (D... Lus10011371
[exp]
21.4 0.6927
AT1G48745 unknown protein Lus10007969
[exp]
23.0 0.6128
AT5G47730 Sec14p-like phosphatidylinosit... Lus10038752
[exp]
38.7 0.6034

Lus10016696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.