Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51460 927 / 0 rhd4 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) AT5G66020 922 / 0 IBS2, ATSAC1B, ATSAC6, SACIB IMPAIRED IN BABA-INDUCED STERILITY 2, SAC DOMAIN-CONTAINING PROTEIN 6, SUPPRESSOR OF ACTIN 1B, Phosphoinositide phosphatase family protein (.1) AT3G51830 557 / 0 ATG5, SAC8 SAC domain-containing protein 8 (.1.2) AT3G14205 160 / 2e-41 Phosphoinositide phosphatase family protein (.1) AT1G17340 158 / 1e-40 Phosphoinositide phosphatase family protein (.1) AT5G20840 148 / 3e-37 Phosphoinositide phosphatase family protein (.1) AT1G22620 139 / 2e-34 ATSAC1 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) AT3G43220 131 / 8e-32 Phosphoinositide phosphatase family protein (.1.2) AT3G59770 54 / 3e-07 AtSAC9, SAC9 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035993 [exp] 1178 / 0 AT3G51460 929 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10009080 [exp] 474 / 2e-161 AT3G51830 800 / 0.0 SAC domain-containing protein 8 (.1.2) Lus10025267 [exp] 442 / 7e-149 AT3G51830 731 / 0.0 SAC domain-containing protein 8 (.1.2) Lus10037446 [exp] 164 / 1e-42 AT3G14205 947 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10013184 [exp] 163 / 2e-42 AT3G14205 923 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10027650 [exp] 163 / 2e-42 AT3G43220 936 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10039913 [exp] 143 / 1e-35 AT3G43220 842 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10014827 [exp] 117 / 4e-27 AT1G22620 1389 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Lus10016941 [exp] 44 / 0.0002 AT1G22620 364 / 3e-119 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G100500 [exp] 1010 / 0 AT3G51460 976 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Potri.016G118300 [exp] 545 / 0 AT3G51830 882 / 0.0 SAC domain-containing protein 8 (.1.2) Potri.001G163900 [exp] 165 / 4e-43 AT3G14205 987 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.018G063700 [exp] 162 / 5e-42 AT3G43220 1043 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.003G071300 [exp] 159 / 6e-41 AT3G14205 1011 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.006G136400 [exp] 156 / 7e-40 AT3G43220 1018 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.019G080300 [exp] 114 / 3e-26 AT1G22620 1397 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.013G107950 [exp] 111 / 3e-25 AT1G22620 1355 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.013G128500 [exp] 50 / 5e-06 AT3G59770 2267 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF02383 [flax] [poplar] Syja_N SacI homology domain
Representative CDS sequence Show only first row Show all	>Lus10016697 pacid=23149120 polypeptide=Lus10016697 locus=Lus10016697.g ID=Lus10016697.BGIv1.0 annot-version=v1.0 ATGATGGAGAGGGCAGACTCAGGGCAGAAGCTATACTCGCGTCTTCGACTCTGGGAATTCCCTGATCAGTATGTCATTGAACCAACTGATGGCTCTTCCG GTGCTCCCCTCGCTGTTTGTCGCAAAGATGGATCAATGTCTCTTATTGACCAAGTCCCGCATTGCACCTCCGTTCGGGTTCCTAAAATCCAGACTATTTT TGGTGTGGTTGGCCTGCTCAAGCTCGTCGTAGGGTCTTACTTGATAGTAATCAATGACCGTGAGTGTGTTGGATCCTACATGGGGCATCACATCTACAAA GTTACATCATTGAAGGTTTTCCCATGTGATCAGTCTTTGAAAAGTACAACAGCTGAACAAAAAAAGGTAGAAGCTGAATTCTCGTCTCTGCTTAATGTTG CGGAGCGAACTCCTGGTCTGTATTTCTCATACGAGGCAAATTTAACATTAAGTGCTCAGCGATTGCATGATCTTGGAGATGAATCAAAATTGATGCCTCT GTGGAGACAGGCAGAGCCCAGGTTTCTATGGAACAATTATATGATGGAAGTCATCATTGATAACAAGCTTGACCAGTACCTTCTTCCTGTTATCCAAGGG AGCTTTCAGAATTTTCAAGCAGCCATCGGGAAGGACATAATTGAAGTCACTTTGATTGCAAGGAGATGTACAAGAAGAAATGGCACTCGAATGTGGAGAA GGGGAGCTGATGCTGATGGATATGTTGCTAATTTTGTGGAGTCTGAACAAATCGTGCAGATGAATGGATATACAGCATCATGCGTTCAGATTAGAGGCTC AATGCCCTTTATCTGGGAGCAGATTGTTGACTTGACATACAAACCTAAGTATGACATTATCAAACCTGAGGAAGCACCTCGAGTCGCAGAACGTCATTTC CTGGATTTGAGGAAAAAGTATGGAAGTGTATTAGCTATCGATCTTGTGAACACTCATGGTGGTGAGGGACACCTGAGCGACAAGTTTTCAAGTGCAGTTC AACCGGTTCTCAACGACGATGTAAGATATGTGCACTTTGATTTCCATCAGATCTGTGGCCATGTTCACTTTGAACGCCTTTCAATTCTCTATGAACAAAT TGAGGATTTCCTGGACAAGAGCGGGTACCTCTTGGTGGATGAGAAAGGTGAAAAATTGAAGGAACAGACTGGAATTGCTAGAACAAACTGTATTGATTGC TTAGACCGAACTAATGTGACTCAGAGCATGATAGGTCGAAAGATGTTAGAACTCCAACTTCGAAGAATTGGTGTTTTTTCTGCTGAAGAAACCATCAGCT CACATCCAAATTTTGATGATAGCTTCAAAATAATGTGGGCTAATCATGGAGATGATATAAGTATCCAGTACTCAGGCACTCCTGCTTTGAAAGGAGACTT TGTAAGGCTTGGGCAGCGGACAACTCAAGGAATCATCAAAGACGGTATTAATGCCCTTGTCCGGTACTATTTGAATAATTTTGCGGATGGCAAGAAGCAG GATGCAATTGATCTGCTGCAAGGACACTACATCGTTTCTGTAAGCCGGGATATGAAACCTCCATCTCAAGCTGCTGGAGGAATTGAGAGCGTGGCCTCTT TCCCTCTGGCATTTGGATTGATAATGGCGGGGTTGGTCTTTGCATTGTTGTCACTTAGACAAGTTCCATACGATATGAAGCACTTATTCTTCTCATTACT GTGGGGAAGCTTTACAGTTGGGATTGCAGCATTTGTGAGGGCTAATGGTCGTGTTTTCTGCAATAGGCCTCGTCTCCATAAGCCTAGATCATAG
AA sequence Show only first row Show all	>Lus10016697 pacid=23149120 polypeptide=Lus10016697 locus=Lus10016697.g ID=Lus10016697.BGIv1.0 annot-version=v1.0 MMERADSGQKLYSRLRLWEFPDQYVIEPTDGSSGAPLAVCRKDGSMSLIDQVPHCTSVRVPKIQTIFGVVGLLKLVVGSYLIVINDRECVGSYMGHHIYK VTSLKVFPCDQSLKSTTAEQKKVEAEFSSLLNVAERTPGLYFSYEANLTLSAQRLHDLGDESKLMPLWRQAEPRFLWNNYMMEVIIDNKLDQYLLPVIQG SFQNFQAAIGKDIIEVTLIARRCTRRNGTRMWRRGADADGYVANFVESEQIVQMNGYTASCVQIRGSMPFIWEQIVDLTYKPKYDIIKPEEAPRVAERHF LDLRKKYGSVLAIDLVNTHGGEGHLSDKFSSAVQPVLNDDVRYVHFDFHQICGHVHFERLSILYEQIEDFLDKSGYLLVDEKGEKLKEQTGIARTNCIDC LDRTNVTQSMIGRKMLELQLRRIGVFSAEETISSHPNFDDSFKIMWANHGDDISIQYSGTPALKGDFVRLGQRTTQGIIKDGINALVRYYLNNFADGKKQ DAIDLLQGHYIVSVSRDMKPPSQAAGGIESVASFPLAFGLIMAGLVFALLSLRQVPYDMKHLFFSLLWGSFTVGIAAFVRANGRVFCNRPRLHKPRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10016697 [exp]	0	1
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10035993 [exp]	1.0	0.9328
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10022790 [exp]	3.9	0.8587
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10018668 [exp]	6.9	0.8592
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Lus10031066 [exp]	7.1	0.8352
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Lus10035450 [exp]	8.7	0.8490
AT5G56890			Protein kinase superfamily pro...		Lus10011933 [exp]	9.4	0.8246
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10011853 [exp]	12.4	0.8078
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10012966 [exp]	16.7	0.8347
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Lus10033080 [exp]	17.9	0.8004
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10013338 [exp]	19.3	0.7741

Compare expression of checked genes

Lus10016697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.