Gene [FLAX] | FIBexDB

Lus10016698 [FLAX]

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT4G35700	66 / 3e-12	C2H2ZnF	DAZ3	DUO1-activated zinc finger 3, zinc finger (C2H2 type) family protein (.1)
AT4G35610	65 / 7e-12	C2H2ZnF		zinc finger (C2H2 type) family protein (.1)
AT4G35280	45 / 2e-05	C2H2ZnF	DAZ2	DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1)
AT2G17180	41 / 0.0006	C2H2ZnF	DAZ1	DUO1-ACTIVATED ZINC FINGER 1, C2H2-like zinc finger protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10035994 [exp]	229 / 8e-74	AT4G35610	68 / 5e-13	zinc finger (C2H2 type) family protein (.1)
Lus10041659 [exp]	158 / 2e-46	AT4G35700	72 / 2e-14	DUO1-activated zinc finger 3, zinc finger (C2H2 type) family protein (.1)
Lus10041633 [exp]	117 / 3e-31	AT4G35700	48 / 2e-06	DUO1-activated zinc finger 3, zinc finger (C2H2 type) family protein (.1)
Lus10023932 [exp]	49 / 1e-06	AT4G35280	126 / 2e-35	DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.005G100300 [exp]	69 / 2e-13	AT4G35700	68 / 4e-13	DUO1-activated zinc finger 3, zinc finger (C2H2 type) family protein (.1)
Potri.009G166200 [exp]	48 / 3e-06	AT4G35280	258 / 4e-85	DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1)
Potri.004G205300 [exp]	48 / 3e-06	AT4G35280	236 / 2e-76	DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1)
Potri.001G224600 [exp]	43 / 0.0002	AT5G56200	71 / 8e-13	C2H2 type zinc finger transcription factor family (.1)

PFAM info

Representative CDS sequence

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>Lus10016698 pacid=23149054 polypeptide=Lus10016698 locus=Lus10016698.g ID=Lus10016698.BGIv1.0 annot-version=v1.0

ATGTCGAGGTCAAACACTCACTCCCCATCTTCCTCCGAAGATAACACCAACTCCCCCCCTTCCTCTCCTCACCTCAGCCTCGCCACCACTGTTGCTGCTG

AGGCCACCACTTCCGCCGTCAACCTCCATCTTTCCGAGGAACAACAAGGGACAGTTGCACCAGTCTCGCAGGCTGCAGCGATAGCGACGATGACAGCTCC

GCCACCGCGGCCATCACTGGCGCGGGGACCCCAAGGAGTTGGCATCCACATCTCTATTTCGGAAGCCGGTGATGAGGGAATAATTCGATGGAGGCCTTCT

AATTCCTCTTCCTTATGGCCTGCAACTGCTGCAATCCCTCCTACTGCAAACCCGCTGCTGTTGAGTCCCAACGCCATCACTACAGCCACGGCATTGCTTG

AACAAGCCTTTCAACCTCCTCCTCCTCAAGAAACAAATAGTAATAAGCGTCAAAGAGGGGAAATGGACGTGCCGTCGGGGCCGCATCAAGAACCAAATAG

TAATAAGCGTCAAAAAGGGGAAATGGACGTACCGTCGGGGCCACCAGTTTGTGCGATATGCAGCAAGGGGTTCCAATCATGGAAGGCAGTGTTCGGACAT

TTGAGGGTGCACAAGGAACGAACTTACCGCGGGGCGTTCCCTCCCCCGGTGTCCAGTCATGATGGATCATCTTCAAGCAGTACTATTGCTATAACAACTA

CTCCTAGGCAGAGAGGGCTGGAGATTGATCTGAATATTCAGTTCAATCCTGATGAAGCGAACGATGAAGATATTAATGTTGATCATGACCAGGCGTTGAC

TCCTCCTCCTCCACCCGCGCTGGAGTCTGAATCAATTGATTTGAATGAACCGGCGGCGGCCACCAAGTCCGACGAAAAGGAGCACGGAGATGGAAGCACC

AGCAATAATGACAAGGCAAAATGA

AA sequence

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>Lus10016698 pacid=23149054 polypeptide=Lus10016698 locus=Lus10016698.g ID=Lus10016698.BGIv1.0 annot-version=v1.0

MSRSNTHSPSSSEDNTNSPPSSPHLSLATTVAAEATTSAVNLHLSEEQQGTVAPVSQAAAIATMTAPPPRPSLARGPQGVGIHISISEAGDEGIIRWRPS

NSSSLWPATAAIPPTANPLLLSPNAITTATALLEQAFQPPPPQETNSNKRQRGEMDVPSGPHQEPNSNKRQKGEMDVPSGPPVCAICSKGFQSWKAVFGH

LRVHKERTYRGAFPPPVSSHDGSSSSSTIAITTTPRQRGLEIDLNIQFNPDEANDEDINVDHDQALTPPPPPALESESIDLNEPAAATKSDEKEHGDGST

SNNDKAK

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35700	C2H2ZnF	DAZ3	DUO1-activated zinc finger 3, ...		Lus10016698 [exp]	0	1

Lus10016698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.