Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17580 418 / 6e-136 Polynucleotide adenylyltransferase family protein (.1) AT1G28090 328 / 5e-105 Polynucleotide adenylyltransferase family protein (.1.2.3) AT5G23690 293 / 8e-91 Polynucleotide adenylyltransferase family protein (.1) AT3G48830 267 / 9e-78 polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035995 [exp] 320 / 1e-104 AT2G17580 75 / 6e-15 Polynucleotide adenylyltransferase family protein (.1) Lus10036013 [exp] 327 / 1e-103 AT5G23690 649 / 0.0 Polynucleotide adenylyltransferase family protein (.1) Lus10016719 [exp] 299 / 9e-93 AT5G23690 635 / 0.0 Polynucleotide adenylyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G100100 [exp] 544 / 0 AT2G17580 459 / 4e-150 Polynucleotide adenylyltransferase family protein (.1) Potri.003G164400 [exp] 334 / 2e-106 AT1G28090 569 / 0.0 Polynucleotide adenylyltransferase family protein (.1.2.3) Potri.015G104300 [exp] 310 / 3e-97 AT5G23690 637 / 0.0 Polynucleotide adenylyltransferase family protein (.1) Potri.012G105000 [exp] 309 / 5e-97 AT5G23690 663 / 0.0 Polynucleotide adenylyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF01743 [flax] [poplar] PolyA_pol Poly A polymerase head domain
Representative CDS sequence Show only first row Show all	>Lus10016699 pacid=23149098 polypeptide=Lus10016699 locus=Lus10016699.g ID=Lus10016699.BGIv1.0 annot-version=v1.0 ATGAGGTTTCTCTCGCAGGGACTGAATCATAACGGCGTGGAAGGGAGAGTACCAACTGAAATCTATGCCGATATGCATTCTGATTCCATAGTTCCACAAA AAAAAGGGACGGACATGTCGAAGTACAAAAGGGTTAATGCGAAGCATCTGGGCATTAGACCTAATCAAATTCCGGATTCGCCATTGACTGTCCTGAAACT TCTGCGACAACAAGGATTTGAGGCATACTTAGTGGGTGGGTGTGTAAGAGACTTAATTTTAGACAAAGTTCCTAAAGATTTTGATGTCATCACCACAGCT AATCTTTCGCAGATCAATAAGAAGTTTAGGCATTCCATCATCATTGGACAAAGATTTCCTATATGTAGGGTGCATATGAAGGGTTCCTTTATTGAGGTAT CAAGTTTTGAAACTGTGGCAAGACACGCTGAAGGAAAGGAGAAAACTCTCGTACCTGAAATTTCGCCCCGACACAGTAAGAAAGATTTCATTCTCTGGCA AGATGGTATGAAACGCGACTTCACAATCAATAGTATGTTCTTCGACCCTTTCAAGAATATAATATATGATTATGCAAATGGGATGGAAGATTTAAGGGCA CTGAATCTGCAAACTGTAATACCTGCTCGACTGTCCTTCCAAGAGGATTGTGCAAGAATTTTGCGTGGCATACGAATTGCTGGCCGTCTGGGCCTTTCAA TTTCACCAGATACTGAAACTGCCATACGGGAACTCTCATCTTCTATTGCAAGCTTGGACAAGTTCAGGTTAATGTTGGAATTTAACTACATGCTCTCTTA TGGAGCTTCGAGGGCTTCTATCATTTTGCTACAGAAATTCAACCTTCTTGGAATATTTCTTCCATTCCATGCAGCTTACCTTCGTCAACAGTCTACGGGA AATTCCACTATGAGTTCCATGATGGTTATGGAATTGCTATTCTATTTGGATAGACTGGTTAATTGTGCTCAACCGTGCAGCAGCAATTTGTGGCTTGGAG TGTTTGCTTTTCACCAGGCATTACTTATCTATCCACAAGAGTTAATGGTAATCTGGGCTTTTGCTTCTGCGCTGTATAGTGGGAACTTGGAGCAAGGCCT CAAATTCGCAAGCCGCCATGCAAAATATCAGGTTGAATTCGAACCTGAGATCTTCAGCTTCTCTGAAACAAAATCAGACGATGAGCTTGCTGATGAAGTA ACTCGCTTTGCGCTTCGTGTTCAAGAATGTGTTGGCTCTTATGTCGACAGGGGCAAGCTCTCAAAGTACATGTCCAGATACCCGGAATTCCCATGCCCTG ACTCGATATTCGTATCAAAGAAGGCGGCGTCAGGGGCTGCTCAACTTTTTGACGTTTTGGCTAGAGAGGACAGCCAGAAAAGTGGTAGCATAAAGAGGAA GGAGTTGACAATAGATTATAAGAAACTAGGGAAAGGGGATCTGCGGGAAACCAGATTTGTGTTAGGCAAGATTATTCTGGAAACTTTGAGTGGCGGGCTT GTTGGAAAGATGGAGGTTAAAAAGCGAGACATATTATCAGTTGAGTCGACATCACAGCAGGGTGCTGTAAAGAAACTGAAAGATGATGAGTCCAGCAGCA TGAAGACAAGAAGGCCGACAAAGAGAGAAGGGGGGGCGAGTCTTTTGCCAGAGCATGAACAAAACAGGATCAAGGGAAGGTCGTTGAAGAGTGAAGAAGA AGAAGCTCACAAGGGGGGTTTGGAAGATGATGGAATGGTGGAAAAAGAGAGATACCGGGATGACGGGGCTGCCAAGTATTATGTTGATCCACAGGTGACT AGAAGAAGGCTGACAAAGAGAGAAGGAGGGACAAGTTGTCGATTGCCGGAGAATGAACGAAACAGGATCAGGGGAAGGTCGTTGAAGGGTGAAGAAGAAG AAGAAGAAGAAGAAGAAGAAGAAGGGGGGTTGGAAGTTGATGGAATGGTCGAAGAAGAGAGATACCGGGATGACGAGGCTGGCAAGTATGTGAACAAGGT AAAAGGTAGAAGACAAGTTGAGAAAATGAACAAGGTGGAAAACGAGAGGGATATGGCGTCAAATTTGACCGGGATGCACGCCACGGGTGAGGAAGGAGGC AGTAGGCCTCCACTATCTTCTCTTTTCAGGTAA
AA sequence Show only first row Show all	>Lus10016699 pacid=23149098 polypeptide=Lus10016699 locus=Lus10016699.g ID=Lus10016699.BGIv1.0 annot-version=v1.0 MRFLSQGLNHNGVEGRVPTEIYADMHSDSIVPQKKGTDMSKYKRVNAKHLGIRPNQIPDSPLTVLKLLRQQGFEAYLVGGCVRDLILDKVPKDFDVITTA NLSQINKKFRHSIIIGQRFPICRVHMKGSFIEVSSFETVARHAEGKEKTLVPEISPRHSKKDFILWQDGMKRDFTINSMFFDPFKNIIYDYANGMEDLRA LNLQTVIPARLSFQEDCARILRGIRIAGRLGLSISPDTETAIRELSSSIASLDKFRLMLEFNYMLSYGASRASIILLQKFNLLGIFLPFHAAYLRQQSTG NSTMSSMMVMELLFYLDRLVNCAQPCSSNLWLGVFAFHQALLIYPQELMVIWAFASALYSGNLEQGLKFASRHAKYQVEFEPEIFSFSETKSDDELADEV TRFALRVQECVGSYVDRGKLSKYMSRYPEFPCPDSIFVSKKAASGAAQLFDVLAREDSQKSGSIKRKELTIDYKKLGKGDLRETRFVLGKIILETLSGGL VGKMEVKKRDILSVESTSQQGAVKKLKDDESSSMKTRRPTKREGGASLLPEHEQNRIKGRSLKSEEEEAHKGGLEDDGMVEKERYRDDGAAKYYVDPQVT RRRLTKREGGTSCRLPENERNRIRGRSLKGEEEEEEEEEEEGGLEVDGMVEEERYRDDEAGKYVNKVKGRRQVEKMNKVENERDMASNLTGMHATGEEGG SRPPLSSLFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17580			Polynucleotide adenylyltransfe...		Lus10016699 [exp]	0	1
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	2.8	0.9436
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10020397 [exp]	3.2	0.9373
AT2G25970			KH domain-containing protein (...		Lus10013531 [exp]	4.6	0.9151
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10014971 [exp]	6.0	0.9146
AT2G34650		ABR, PID	PINOID, ABRUPTUS, Protein kina...		Lus10036150 [exp]	9.9	0.9064
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Lus10010990 [exp]	11.2	0.9109
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10023817 [exp]	12.0	0.9135
AT5G64200		ATSC35, At-SC35	ARABIDOPSIS THALIANA ORTHOLOG ...		Lus10023802 [exp]	12.6	0.8937
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10035282 [exp]	15.0	0.9093
AT2G25970			KH domain-containing protein (...		Lus10023854 [exp]	15.9	0.9052

Compare expression of checked genes

Lus10016699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.