Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38200 622 / 0 Class I glutamine amidotransferase-like superfamily protein (.1) AT1G66860 609 / 0 Class I glutamine amidotransferase-like superfamily protein (.1) AT1G15040 516 / 0 Class I glutamine amidotransferase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035996 [exp] 860 / 0 AT5G38200 625 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10009152 [exp] 610 / 0 AT5G38200 593 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10028493 [exp] 602 / 0 AT5G38200 590 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10039726 [exp] 103 / 7e-26 AT5G38200 107 / 5e-28 Class I glutamine amidotransferase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G120600 [exp] 696 / 0 AT5G38200 657 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.017G118551 [exp] 649 / 0 AT5G38200 637 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF07722 [flax] [poplar] Peptidase_C26 Peptidase C26
Representative CDS sequence Show only first row Show all	>Lus10016700 pacid=23149049 polypeptide=Lus10016700 locus=Lus10016700.g ID=Lus10016700.BGIv1.0 annot-version=v1.0 ATGGCGAATTCCGATCTCTCAATGATCCTTCCCAGGGTCCTCATCGTCTCACGTCGCACCGTTCGCAAAAACAAGTTCGTCGATTTCGTCGGGGAATACC ATCTGGATCTCATCGTCAACTACGGCGCTGTCCCAGTGATAGTCCCGAGAGTGAGTGGAGTCCACATGCTATTGGAGAGCTTCGAGCCCATCCATGGCGT CCTTCTCTGCGAAGGGGAAGACATCGACCCGTCTCTTTACGATTCCGAACTCTCAGGGTTTTCAGCGGAAGAGCTGGAAGATATCAAGAGAATCCACGCC AGCGACACCGTCATTGACAAGGAGAAAGACACCATCGAGCTGAGCCTCGCCAAGCTCTGCCTCGAGAGGAATATTCCGTATCTGGGGATCTGCCGTGGGT CCCAGGTTCTGAATGTGGCCTGCGGAGGGACGCTTTATCAGGATGTGGAGAAAGAGCTATCTAAGAAGAAACAGGAAAGAGTTCTCCACATTGATTATGC TAATTACGACGGTCATAGGCACCCGGTCAAGATTGTTGAGAACACTCCATTGCACAAGTGGTTTCAGGACTCGTTAATGGAGCAGAACAGCAGGATGGAG ATCTTGGTTAATAGCTACCATCACCAGGGTGTAAGGAAACTGGCTCAGCGTTTCTTGCCCATGGCATATGCTCCTGACGGCTTGGTTGAAGGGTTTTATG ATCCTGATGTTTACAATCCTGATGAAGGTAAGTTCATCATGGGTCTGCAATTCCATCCTGAAAGAATGAGGAATGACGATTCTGATGATTTTGATTACCC TGGTTGTGCTGTTGCATACAAGCAATTCGTGAAAGCAGTGATAGGGTATCAGAAGAAGCTGAGTAGCTCAGCGCCGGTGCCAAAGAAGGCTCAAAAACTG GACAAAGAGTTGGAAAGCAAACGAAGGATACTTGTGAGGAGCTTCTCCATTGCTAAGAACATGTATAGCTCTGGAAATGGGATGGGTTCGGTCGGTCATG ACTCTGAGCTTGAACCTGGAGCAGCATTCTTGGAGGCAAACACAGTACTGAGTCTGCAGCAAGTGAATAGACTGAAACAGATGGGGGCTACGGTGAGGAA TGCTTCAGGATACAAACAAAGGCTGAGGATGAACGAAGAGAGGGAACATATTGCGAGGAGTATAATGGGGAATATGAATATAGATCAATTGTCAGACTTG TTGTCTTTCTATCACAAGATGGGTAAAATTTGTTCTGAGACCATAGAAAGGAAGCTTGAAATGCTCAAAGAAGATAATTGA
AA sequence Show only first row Show all	>Lus10016700 pacid=23149049 polypeptide=Lus10016700 locus=Lus10016700.g ID=Lus10016700.BGIv1.0 annot-version=v1.0 MANSDLSMILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVNYGAVPVIVPRVSGVHMLLESFEPIHGVLLCEGEDIDPSLYDSELSGFSAEELEDIKRIHA SDTVIDKEKDTIELSLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDVEKELSKKKQERVLHIDYANYDGHRHPVKIVENTPLHKWFQDSLMEQNSRME ILVNSYHHQGVRKLAQRFLPMAYAPDGLVEGFYDPDVYNPDEGKFIMGLQFHPERMRNDDSDDFDYPGCAVAYKQFVKAVIGYQKKLSSSAPVPKKAQKL DKELESKRRILVRSFSIAKNMYSSGNGMGSVGHDSELEPGAAFLEANTVLSLQQVNRLKQMGATVRNASGYKQRLRMNEEREHIARSIMGNMNIDQLSDL LSFYHKMGKICSETIERKLEMLKEDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38200			Class I glutamine amidotransfe...		Lus10016700 [exp]	0	1
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008614 [exp]	1.7	0.9452
					Lus10033677 [exp]	4.4	0.8785
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10020122 [exp]	4.6	0.9185
					Lus10015147 [exp]	7.5	0.8692
					Lus10030774 [exp]	7.9	0.9191
AT1G14550			Peroxidase superfamily protein...		Lus10009899 [exp]	9.4	0.8769
AT4G37390		AUR3, YDK1, GH3...	YADOKARI 1, AUXIN UPREGULATED ...		Lus10014869 [exp]	10.1	0.8991
AT1G17860			Kunitz family trypsin and prot...		Lus10030354 [exp]	17.3	0.8980
AT5G12890			UDP-Glycosyltransferase superf...		Lus10025514 [exp]	21.6	0.8063
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10020272 [exp]	23.4	0.8534

Compare expression of checked genes

Lus10016700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.