Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23230 1019 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035997 [exp] 931 / 0 AT1G23230 1850 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G133300 [exp] 1209 / 0 AT1G23230 2287 / 0.0 unknown protein Potri.010G108350 [exp] 0 / 1 AT1G23230 0 / 1 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11573 [flax] [poplar] Med23 Mediator complex subunit 23
Representative CDS sequence Show only first row Show all	>Lus10016701 pacid=23149139 polypeptide=Lus10016701 locus=Lus10016701.g ID=Lus10016701.BGIv1.0 annot-version=v1.0 ATGGATCAGAGTCAGAGGTCGTTAGCCTCCACAACAACTGCTTCTCGGGGTTATCAGTTTCATCCAGCTCGAGCTGCCATCCTCGACCTCTTCAATCTCT ACCTAGGAGATCAAGACCAACTGCGCGCGGTCACTGAATCTGTACTTGTATCTCTGGTTGTCCAGTGTAGTAATCATGCCCCACGAGCTGAATTTCTTTT GTTTGCTTCGCGAATCCTGTCCAGTATAGGGTGCATAAACTGGGACAGCTTCTTGCCAGGTCTCCTTTCTTCCGTGTCCTCTGCAGAAATGGCAGTGCGT CAGTCTGGTCTATCAGATGTTTCGGGCAATGGACAACAATCTACTACAAGGGCCAGCTCATCTTCGAGGGATAATGCTCTAAGCAGTTTGCGGCAGCATT GTTGCAAAATTGTTCTAATTGGTTTAGGCTTTAATTTGAAGCCAGTGACTCACATCGATATTTTCTGTCATATGTTGAACTGGTTGGTGAACTGGGATCA AAAGCACCAAAGCTCTGATGAATCTGATGGCAGGAAGTCTTGGAGACCTGACAAGGCTCTTGTTGAATGGTTACATAGCTGTCTAGATGTCGTCTGGCTA TTGGTTGATGAAGATAAGTGTCGTGTTCCATTTTATGAATTGTTACGCAGTGGTGTGCAATTTATAGAGAACATACCTGATGACGAAGCCTTATTTACTC TCATCCTAGAGATACACAGGAGAAGAGATATGATGGCAATGCACATGCAAATGTTAGACCAACACCTTCATTGCCCTACATTTGGTACTCATCGGTTTCT GTCTCATACGACTACTAATCTTTCAGTTGAAGTGGTACCAAACCTGCGATATTCCCCAATCACATACCCTAGTGTACTTGGAGAGCCCCTGCATGGAGAG GCGGATCTAGCGAATTCTATTCAAAAGGGAAGCTTGGACTGGGAAAGAGCGTTGCGATGCATTAGACATGGTCTTCGTACTACACCATCTCCTGACTGGT GGAAGCGCGTGCTCCTTGTGGCTTCCTGCTACAGAAATCCTGCTCATGGGCCAACTCCTGGTGCTGTTTTTACTTCTAGTATGATCTGCAGTGATCAGAA GTTTCTTAGAACCAATCATGTAACATGGCTGCTTGCACAAATTATCAAGGTTGAGCTTGTGATGAATGCACTAAAGACAGATGCTCGAAAGGTAGAGACA ATTAGAAAGATTATATCTTTCCACAGGGAGGACCGGAGTTCAGATCCCAATAATCCTCAAAGCATTCTTCTTGATTTTATAAGCAGTTGTCAGAACTTGC GTATCTGGTCATTGAACACATCAACAAGGGAATATCTGAACAACGAGCAGCTTCAGAAAGGAAAGCAAATAGATGAATGGTGGACGCAAATGGGCAAAGG GGAGCGCATGATGGATTACATGAATATGGATGATAGATCAATTGGGATGTTTTGGGTTTTCTCCTTCACCATGGCACAACCTGCCTGTGAAGCTGTAGTA AACTGGTTATCGTCGGCAGGAGTTTCTGAGTTATTGCCAGGAACAAATATACAGTCCAATGAAAGAGTGATGGTGATGAGAGAAGTAAGCCCATTGCCAA TGGCCTTATTATCTGGGCTTTCAATGAACTTATGCTTGAAGTTGGTTTTCCAATTAGAAGATTCTCTGTTTGCCGGCCAGCATTTAGCCCAGAGGTATCC AGCTTTGTGGAGCAAGCCCGGGGTAACTCTTCTGGTGCTTGAAATCGTAAACTATAGGCTACTTCCACTATACAGCATGTTGGAACAGATAATGGCAACC AGCCAGCATACATGGTCAGAGAAGACACTATCCCATTTCCCTCCTCTTATTCGGGATGCATTAACTAGGAGAACGGATAAGCGGGGTTTGGGTATTCAAG CATGGCAACAGGCAGAAACGACCGTGATTAACCAGTGTACGCAGCTTCTCTCACCATCTGCTGATCCTAGCTATGTCATGACATATATCAATCATAGTTT TCCTCAGCATCGACAGTATCTTTGTGCTGGTGCATGGATTCTTATGCAGGAGCACCCTGAAAGCATTAATAGTGGACATTTGGCACGTGTTCTGAGAGAA TTTTCACCTGAAGAAGTAACAGACAATATATATACAATGGTGGATGTCCTCCTGCACCATATTCATGTTGAACTTCAACATGGACATTCATTACAGGTCG TAACCAATTTTCTGCTTCAGGACCTTTTGATGAAAATTTGTGCAAACCTTGCATATTTTGTTTGGACAAATGAGTTGCTTCCGTTGGATATTTTGCTCCT AGCGCTCATTGACAGAGATGATGATCCACATGCATTGCGAATTGTGATTAGTTTGCTTGATAGGCAAGAGCTTCAACAAAGAGTCAAACTCTTCTGTTTA AATCGTGGGCCTCCTGAACACTGGCTTCACTCAGGAATTTTCAAGCGCCTAGAGTTACACAAGGCTCTTGGGAATCATCTTTCTTGGAAGGACAGGAATC CGACATTCTTTGACGACGTGGCATTACGGTTGCTCCCAGTAATTCCTTTGATTGTGTATCGGCTTATTGAGAATGATGCCATAGACCCTGCTGACAGAGT TCTGGCCATGTATTCTCCATTTCTAGCGTATCACCCATTCAGATTCACTTTTGTTCGTGACATACTTGCATATTTCTATGGTCATCTTCCTGGAAAGCTG ATTGTGCGTATATTGAACGTGTTGGACCTTAGCAAGATCCCATTTTCTGAATCATTCCCGCAGCACATTAGTTCGTCAAACCCTGTTATGTGCCCGCCAC CTGAGTACTTTGCAACTCTTTTGTTGGGGCTGGTAAACAATGTAATACCTCCATTACATGTAAACTCGAAGTATGGGTCAATTGGAGAATGTCTAAACCT TTCAGGGCGCATGTCACATAGCAAGACTCCAGGAACATCTCAATCAAGTCCTACAAACAGTTTTGAGGGACAGAAGGCTTTCTATCAAATTCAGGATCCT GGAACACATACTCAGCTTGTTCTCGAAACTGCAGTGATAGAGCTGCTGTCACTGCCCGTGTCTACATCCCAAATTGTTTCATGTCTGGTTCAAGTTGTCG TAAATATACAACCAACCTTAATTCAGTCAAGTAATGGGATTTATGGAACGTCAAACAATGTTGGTCAAGGATCTGGTTTACCAACATCTCCTTCTGGGGG AAGCACTGATTCCTTAGGTGCAAGCAGATCAGCTCCTTCAGTGTCGGGGATCAACGCCTCTAATTTTGTTTCTCGGAGTGGTTATACATGCCAACAACTC TCTTGCCTAATGATACAGGCATGTGGTTTGCTACTGGCTCAGCTACCTCCCGATTTTCATATGCAACTCTATGCCGAGGCATCACGTATAGTGAAAGAGA CTTGGTGGCTTAGTGATGACAAAAGGTCATTGGGAGAACTAGATTCTGCAGTTGGCTATGCTTTGCTGGACCCAACTTGGGCTGCTCAAGACAACACCTC CACTGCTATTGGTAACGTTATTGCACTTCTGCATTCATTTTTCGGAAATCTCCCTCAGGAATGGCTGGAAGGTACGCATGTGATAATTAAAAACCTTCAG CCTATAAAATCAGTTGCAATGCTGAGAATAGCCTTCCGGATCATGGGTCCATTACTTCCAAGACTGGCAAATGCTCATGCGATTTTCAACAAGACGTTGT CATTGCTTCTAAACATGATGGTTGATGTGTTGGGAAAGAACTCTGAACCATCGATGACAGGAGGGGCATCAGAAATAGCAGATATCATTGATTTCCTGCA TCATGTGGTGCACTACGAAGGACAAGGCGGAGCAGTGCAGGGTAACAGCAAGCCGAGAGCAGAGGTACTTGCTCTTTGTGGTAGAGCCATTGAGAATCTA CGACCTGATGTTCAACATCTTCTTTCCCATTTGTCCCCAGATATGAATTCTTCCATATATGCCTCTACCCATCCAAAGCTGCTCCAAAACCCTTCTTGA
AA sequence Show only first row Show all	>Lus10016701 pacid=23149139 polypeptide=Lus10016701 locus=Lus10016701.g ID=Lus10016701.BGIv1.0 annot-version=v1.0 MDQSQRSLASTTTASRGYQFHPARAAILDLFNLYLGDQDQLRAVTESVLVSLVVQCSNHAPRAEFLLFASRILSSIGCINWDSFLPGLLSSVSSAEMAVR QSGLSDVSGNGQQSTTRASSSSRDNALSSLRQHCCKIVLIGLGFNLKPVTHIDIFCHMLNWLVNWDQKHQSSDESDGRKSWRPDKALVEWLHSCLDVVWL LVDEDKCRVPFYELLRSGVQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRFLSHTTTNLSVEVVPNLRYSPITYPSVLGEPLHGE ADLANSIQKGSLDWERALRCIRHGLRTTPSPDWWKRVLLVASCYRNPAHGPTPGAVFTSSMICSDQKFLRTNHVTWLLAQIIKVELVMNALKTDARKVET IRKIISFHREDRSSDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWTQMGKGERMMDYMNMDDRSIGMFWVFSFTMAQPACEAVV NWLSSAGVSELLPGTNIQSNERVMVMREVSPLPMALLSGLSMNLCLKLVFQLEDSLFAGQHLAQRYPALWSKPGVTLLVLEIVNYRLLPLYSMLEQIMAT SQHTWSEKTLSHFPPLIRDALTRRTDKRGLGIQAWQQAETTVINQCTQLLSPSADPSYVMTYINHSFPQHRQYLCAGAWILMQEHPESINSGHLARVLRE FSPEEVTDNIYTMVDVLLHHIHVELQHGHSLQVVTNFLLQDLLMKICANLAYFVWTNELLPLDILLLALIDRDDDPHALRIVISLLDRQELQQRVKLFCL NRGPPEHWLHSGIFKRLELHKALGNHLSWKDRNPTFFDDVALRLLPVIPLIVYRLIENDAIDPADRVLAMYSPFLAYHPFRFTFVRDILAYFYGHLPGKL IVRILNVLDLSKIPFSESFPQHISSSNPVMCPPPEYFATLLLGLVNNVIPPLHVNSKYGSIGECLNLSGRMSHSKTPGTSQSSPTNSFEGQKAFYQIQDP GTHTQLVLETAVIELLSLPVSTSQIVSCLVQVVVNIQPTLIQSSNGIYGTSNNVGQGSGLPTSPSGGSTDSLGASRSAPSVSGINASNFVSRSGYTCQQL SCLMIQACGLLLAQLPPDFHMQLYAEASRIVKETWWLSDDKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNVIALLHSFFGNLPQEWLEGTHVIIKNLQ PIKSVAMLRIAFRIMGPLLPRLANAHAIFNKTLSLLLNMMVDVLGKNSEPSMTGGASEIADIIDFLHHVVHYEGQGGAVQGNSKPRAEVLALCGRAIENL RPDVQHLLSHLSPDMNSSIYASTHPKLLQNPS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23230			unknown protein		Lus10016701 [exp]	0	1
AT1G23230			unknown protein		Lus10035997 [exp]	1.0	0.9544
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10030305 [exp]	1.4	0.9133
AT4G15475			F-box/RNI-like superfamily pro...		Lus10012764 [exp]	1.7	0.9041
AT1G03370			C2 calcium/lipid-binding and G...		Lus10001915 [exp]	2.2	0.9031
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10015179 [exp]	4.0	0.9037
AT5G22450			unknown protein		Lus10020607 [exp]	4.9	0.8805
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Lus10033474 [exp]	5.5	0.8463
AT2G39260			binding;RNA binding (.1)		Lus10040364 [exp]	7.9	0.8519
AT1G73875			DNAse I-like superfamily prote...		Lus10032490 [exp]	9.3	0.8477
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10010531 [exp]	9.5	0.8775

Compare expression of checked genes

Lus10016701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.