Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33240 1122 / 0 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) AT1G71010 1082 / 0 FAB1C FORMS APLOID AND BINUCLEATE CELLS 1C (.1) AT3G14270 791 / 0 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G34260 400 / 3e-115 FAB1D FORMS APLOID AND BINUCLEATE CELLS 1A (.1) AT1G10900 79 / 2e-14 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT5G26360 77 / 6e-14 TCP-1/cpn60 chaperonin family protein (.1) AT1G60890 76 / 1e-13 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G77740 71 / 5e-12 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT1G21980 68 / 5e-11 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT3G09920 66 / 3e-10 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035998 [exp] 3088 / 0 AT1G71010 1660 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Lus10038127 [exp] 768 / 0 AT4G33240 1429 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10005176 [exp] 458 / 2e-134 AT4G33240 1046 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10038129 [exp] 453 / 9e-133 AT3G14270 1144 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10005173 [exp] 454 / 1e-132 AT4G33240 1063 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10028710 [exp] 349 / 3e-98 AT1G34260 1186 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Lus10006051 [exp] 343 / 3e-96 AT1G34260 1175 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Lus10021150 [exp] 79 / 2e-14 AT5G26360 1046 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10040514 [exp] 79 / 2e-14 AT5G26360 996 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G113700 [exp] 1991 / 0 AT1G71010 1728 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Potri.008G128800 [exp] 1928 / 0 AT1G71010 1714 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Potri.001G163200 [exp] 836 / 0 AT3G14270 2134 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.003G072300 [exp] 808 / 0 AT3G14270 2157 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.013G116400 [exp] 399 / 3e-114 AT1G34260 1184 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Potri.019G087000 [exp] 363 / 3e-102 AT1G34260 1190 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Potri.T046300 [exp] 82 / 1e-15 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.018G138200 [exp] 82 / 2e-15 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G133800 [exp] 77 / 7e-14 AT5G26360 1028 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.001G211200 [exp] 76 / 1e-13 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0016 [flax] [poplar] PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10016702 pacid=23149044 polypeptide=Lus10016702 locus=Lus10016702.g ID=Lus10016702.BGIv1.0 annot-version=v1.0 ATGGGAATACCTGATACTTCTCTACTGGAGAAGGTTAAGTCTTGGATTGCTTGGGGAGGAAGCGATTTATCACCATCATCTTCAGTGTCCACTGAATTCG AGATGCACAATAGCAGGGTCAGAATGTGCTCCGAGTGCAATACAAGTTCTAATGAGCTTTCTAACGGATATCATTGTGATAGCTGTGGCCGATGGGTGTG TCTCAAATGCATCAAAGAACTGGTGTCTCATCATGTTGTTGAGTCTACTGGCGCTGAACAAAATCTCCATTCCGAGGAACCTATCAAATTATGCAAGTTT TGCGGCCTGCCTATAAAGATCAGTGAAAAGGTGCATCCCACAGACTCTCCCCTTGAAAGCCCTGAGCCACCTTCGCCATCTTTTAGCGGCGAATCTATCC AAGGTGATCGTCTTGCCCGCTATCTTGAATCACAGGACTGTGAATATTCTCCCCTTTCAGTAACCTGCAACAATATGAATGCCTTTGGCCCTCTTCCATG CCTTGCTTCTGTTCGCTGTTCTCGTAGCAGGGAAGGAGATGAAGAGCAGGCGGAGGATGCCGAGAAGCACTTTCACAGCCCATCTAATGAATATATATCT GATGTAGATTCAAGTAGTATTAGCTCTAGGCTTGAGTTTTGCAGTTTTAAGTCGGTGGGTTCAAGTCCTTTTGATAGCCCATCTTCTGGAACTGATTTTA CTTCTTATAATAGAATGGGGCATGCTGTACAGCAGGGGCAAGAAGATAGCCCCTTGTCCCTGAGAGACGGTCCGTTGGATCAAGAAAATATTGCAGTTTT GAGACGGCCTGTTATAGGAGCAGCAGAGCCAGATAATGCAGATGATTACTCTGATGATCTCTCGGCTTCAAGAAATCATTATGAAAAGAAACCTTGGGAC TTTGAAAGTAACGGACTTATCTGGTCCCCCCCTCTTCCCGTGGATGAAAATGATGACGCTGAAAGTAATTTCTTTGCTTATGACGATGACGATGACTATT TTACTGGGGATAGTGCAACCTTCTCAGCAAGTAGCAGCCTTTCACGTACATTTTCAGCCAAGGAAAGACAGAGTGACGGTGACAAAGAGCCTAAATTTGC AATACAAGGACACTTTAGGGCTCTGGTATCCCAACTTCTGCAGGGGGAGGGAATAAAAACCAGCGGGGTTGATAGCAGTGAAGATTGGTTGGATATAGTT ACTACGTTAGCATGGCAAGCTGCAAATTTCGTGAAACCTGATACTAGAAGAGGAGGCAGTATGGACCCTATTGATTATGTAAAGGTGAAGTGTATAGCAT CAGGAATTCCAATTGATAGTGCCCTAATAAAGGGAGTTGTTTGTTCGAAAAACATAAAGCATAAGCGCATGACAACACAATACAAAAACCCCAGACTACT ACTTCTTGGGGGGGCTCTGGAATATCAAAGTGTTACTAATCAACTGGCATCCTTTAATACATTGGCGCAAGAGGAAAATGATCATCTGAAGATGATTGTT TCCAAGATCGAGGCTCTGCGCCCCAATGTTTTGTTAGTGGAGAAAAATGTATCTCCTTATGCCCAAGAATATCTGTTAACAAAGGAAATATCATTGGTTC CGAATGTGAAGAAACCATTGATGGAATGCATAGCACGGTGCACTGGCGCTCTTATTAGTCCATCAATTGATACAATCTCAACTACGCGGCTGGGTAACTG TGAACTCTTCCGTGTGGAGAGATTTTTAGAGGAACATGAGCCTGTTAATCAGTTCAACAAGAAGCCAACCAAGACTTTGATGTTCTTCGAAGGATGTCCA AGACGATTGGGCTGCACGGTCCTTCTGAGGGGCAAGTGCTGCGATGAACTCAAGAAAATTAAGCATGTTGTTCAATATGCTGTTTTTGCCGCATATCACT TATCCCTTGAGACTTCGTTCCTTGCTGATGAAGGTGCAAGTCTTCCTAAGATAAAATCTGAACAAACGGTTACCATGCCAGCGGACGTAAGGATGTCAGT CGTTCCTTCAAACAAGTTTGATGCAATTGCTGACTTTTGTTCCGATGATAATGATCATACAGGATTGGACTTGGTGTCTGAAAATATTGATGCATGTGGC ACTACTCAGTCTCTTGTTCCTGTTAATTATAGCTTTGGAGATATACTCCCTGATTTATGCCATATTCCTATGTCGAACTCAGTCTTACAACACTTTGCTA CTTGTGATTGTAATATGCCGATGACGTCTAGAGTTCCTGTTCTGGATGTCAATAGTCTTTCACATCCTGAGTTGTTAGATATCATTGCTGATCAGCCGAG CCAAGTAGGTGAGACCTTAGAGTTGGAGAAATCTGACCGGACTGATGGACATGGAACTGTATGTGAACGTTCTCGACTCCTGCGTATAAAATTTTATGGA TCATTTGATAAACCACTGGGAAGATATCTTCGTGATGACCTCTTTGATCAGACATCTTTTTGTAGGAGTTGTAAGGAGCCAGCTGAATCGCATGTATTAT GTTATACTCACCAGCAAGGGAATCTTACAATTAACGTGAGGTCCCTTCCCTCTATTAAGCTTCCTGGCGAACAAGATGGTAAAATATGGATGTGGCATAG ATGCTTGAGGTGTGCTCATGTAGATGGAGCCCCACCGTCAACTCGTAGGGTAATTATGTCAGATGCTGCTTGGGGACTTTCATTTGGGAAGTTCTTGGAA TTGAGCTTTTCAAACCATGCAACTGCAGATCGTGTTGCTCCATGTGGTCATTCATTACAGAAAGATTGTCTTCGCTTCTATGGGTTTGGGAGCATGGTTG GATTCTTTCGTTATTCTCCTATTGCTATTCTTAATGTACATCTGCCACCTTCGGTCCTGGAATTTACGGGCATTTGTCAGCAAGAGTGGATCAGAAAAGA GGCAGCCGAGCTTCTTAGCAAGGTTGAAATCTTTTACTCGAAGATTTCTAATGTGCTTGATAGCTTGGAAGAGAGAAGTAAGTCATATGGTTGTCAATTG TCCGAGGCAACTGAGCTGCAGAATCATATTCTTGATTTGAAAGTTCAACTTGTAAAGGAGAGGAGCAACTATTCTGAAACTCTGAAACTTGCTGTCATGG AGAGTCTACCACCAGGACAGGAAGGTTTAGATATTCTGGAGCTCAATCGTACAAGGCGTTCCCTCATAATTGACTCGCGTGTCTGGGACCGTCAAATATA TTCGCTAGATTCTCTCCTTAAGACAATTGTGACTATTCATCCTAAACAAAAGGTTGTGTGTCAAAATATCTCGATGGCAGGAAGTGGTGATTCTTTGGGA TGTCCAGAATCACTTTGTTCTGCTGGTAATGATCACCAGTTTAAGCAGGGAGTGATCAGTCACTTAGCTAAGCAATCTCTTCCTGAAGATTTAGTATTAT CTTCTCGTCATGTTCATGGACAGGAGGATGTGCATTCGGATGGTGAGCCTAGCATAACCAAGACTATTACTGACCGCATTGCTTGTGATGCATCCAATTT GTCTGACAGAATCGATTCGGCATGGAGTGGTACTGATCAATGTGCTATGAAGGTTCAGGAACTGGACTCATCTGACAATAGTGGGCTGATTAGGGTTGCT ACTAATTCTCCTCTAAAAAGAATGATGGGACCAGTAAGAGTTAATTCTTTTGACTCTGCATTGAGAGTCCAAGAACGAATACAGAAAGGAATGCCGTTCT CGAATCTCCGATCATTCCATGCTTCTGGAGATTACAGGACTATGTTGAGAGATCCTGTATCAAACACTTCGAGGACTGACTCTCAATCTCAAGCATTTCC TTTGGACACACAGAGGTCAAATGTATTATTGACTGCGACACCTTCATTTATATCTTCTGCATCTGACATGACTGGGGGAGCTCGATTTCTGCTTCCTCAC AGGACTCACAGTGACGTAGTGATTGGTGTTTATGATGATGATCCTGCCAGCATAGTATCTTATGCTCTTAATTTGAAAGAACACGAGGATTGGGTAGCAG CTAACAAGTCAAATGAGATTGGAGGCAAATGCAATATAGGTGTTCTGGGGAGGGAAGATTCTGCTGCTTCCATGATATCAGGATGGCAATCTTTTGGTTC CTTGGACTTCGACTATATGAATTACGGATCTGAAGTAATATCATCTTCCATCAGTAACTTGTTCACTGATTCCAAGAAATCCCCACATTTTGGAATATCT TATAATGATGCTTCTTCTGGTGTTGGAGGTAAAGTGAAGTACTCAGTGACCTGCTATTTTGCCAACCAGTTTCACTCGTTGAGGAAGAAATGCTGCCCGA GTGATGTTGATTTTGTTCGGTCCTTAAGCCGCTGCCAGAAATGGAGTGCACAGGGTGGGAAAAGCAACGTCTACTTTGCCAAATCATTGGATGAGCGTTT CATTTTAAAACAAGTTAAGAAGACAGAGTTGGAATCCTTTGAGGAATTTGCACCTGAATATTTCAAATATGTAACAGAGTCTTTGAACTCTGGAAGTCCA ACTTGCCTTGCAAAAATTCTTGGAATATATCAGGTTGCTGTAAAGCACTTAAAAAGTGGCAGAGAAACAAAGATGGATTTAATGGTAATGGAGAACCTGT TTTTTAGGAGAAAAATATCTAGGGTATATGACCTTAAGGGCTCTGTACGGTCCCGTTACAATCCCGATAGTACAGGAGTGTTGCTGGATATGAATTTAGT GGAGGAATTGCGAACAGAACCCATATTTCTGGGGAGCAAAGCAAAAAGAAGCCTAGAGAGAGCAATATGGAATGACACATCTTTTAAAAGAGCAATATGG AATGACACATCTTTTCTTGCGTCAGTAGATGTCATGGACTACTCGTTGCTGGTAGGAGTGGACGAGGAGAAGAAGGAATTGGTTTTAGGTATAATAGACT TCATGAGACAATATACTTGGGACAAGCACTTGGAGACATGGGTAAAGGCATCCGGAATACTTGGAGGTCCGAAAAATGCTTCTCCGACAATCATTTCTCC GGTTCAGTACAAAAAGAGGTTTAGAAAGGCAATGACTTCTTACTTTCTCACGGTTCCTGACCAGTGGTCTTCATGA
AA sequence Show only first row Show all	>Lus10016702 pacid=23149044 polypeptide=Lus10016702 locus=Lus10016702.g ID=Lus10016702.BGIv1.0 annot-version=v1.0 MGIPDTSLLEKVKSWIAWGGSDLSPSSSVSTEFEMHNSRVRMCSECNTSSNELSNGYHCDSCGRWVCLKCIKELVSHHVVESTGAEQNLHSEEPIKLCKF CGLPIKISEKVHPTDSPLESPEPPSPSFSGESIQGDRLARYLESQDCEYSPLSVTCNNMNAFGPLPCLASVRCSRSREGDEEQAEDAEKHFHSPSNEYIS DVDSSSISSRLEFCSFKSVGSSPFDSPSSGTDFTSYNRMGHAVQQGQEDSPLSLRDGPLDQENIAVLRRPVIGAAEPDNADDYSDDLSASRNHYEKKPWD FESNGLIWSPPLPVDENDDAESNFFAYDDDDDYFTGDSATFSASSSLSRTFSAKERQSDGDKEPKFAIQGHFRALVSQLLQGEGIKTSGVDSSEDWLDIV TTLAWQAANFVKPDTRRGGSMDPIDYVKVKCIASGIPIDSALIKGVVCSKNIKHKRMTTQYKNPRLLLLGGALEYQSVTNQLASFNTLAQEENDHLKMIV SKIEALRPNVLLVEKNVSPYAQEYLLTKEISLVPNVKKPLMECIARCTGALISPSIDTISTTRLGNCELFRVERFLEEHEPVNQFNKKPTKTLMFFEGCP RRLGCTVLLRGKCCDELKKIKHVVQYAVFAAYHLSLETSFLADEGASLPKIKSEQTVTMPADVRMSVVPSNKFDAIADFCSDDNDHTGLDLVSENIDACG TTQSLVPVNYSFGDILPDLCHIPMSNSVLQHFATCDCNMPMTSRVPVLDVNSLSHPELLDIIADQPSQVGETLELEKSDRTDGHGTVCERSRLLRIKFYG SFDKPLGRYLRDDLFDQTSFCRSCKEPAESHVLCYTHQQGNLTINVRSLPSIKLPGEQDGKIWMWHRCLRCAHVDGAPPSTRRVIMSDAAWGLSFGKFLE LSFSNHATADRVAPCGHSLQKDCLRFYGFGSMVGFFRYSPIAILNVHLPPSVLEFTGICQQEWIRKEAAELLSKVEIFYSKISNVLDSLEERSKSYGCQL SEATELQNHILDLKVQLVKERSNYSETLKLAVMESLPPGQEGLDILELNRTRRSLIIDSRVWDRQIYSLDSLLKTIVTIHPKQKVVCQNISMAGSGDSLG CPESLCSAGNDHQFKQGVISHLAKQSLPEDLVLSSRHVHGQEDVHSDGEPSITKTITDRIACDASNLSDRIDSAWSGTDQCAMKVQELDSSDNSGLIRVA TNSPLKRMMGPVRVNSFDSALRVQERIQKGMPFSNLRSFHASGDYRTMLRDPVSNTSRTDSQSQAFPLDTQRSNVLLTATPSFISSASDMTGGARFLLPH RTHSDVVIGVYDDDPASIVSYALNLKEHEDWVAANKSNEIGGKCNIGVLGREDSAASMISGWQSFGSLDFDYMNYGSEVISSSISNLFTDSKKSPHFGIS YNDASSGVGGKVKYSVTCYFANQFHSLRKKCCPSDVDFVRSLSRCQKWSAQGGKSNVYFAKSLDERFILKQVKKTELESFEEFAPEYFKYVTESLNSGSP TCLAKILGIYQVAVKHLKSGRETKMDLMVMENLFFRRKISRVYDLKGSVRSRYNPDSTGVLLDMNLVEELRTEPIFLGSKAKRSLERAIWNDTSFKRAIW NDTSFLASVDVMDYSLLVGVDEEKKELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNASPTIISPVQYKKRFRKAMTSYFLTVPDQWSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Lus10016702 [exp]	0	1
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Lus10035998 [exp]	1.0	0.9736
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10019908 [exp]	2.2	0.8565
AT1G17450			B-block binding subunit of TFI...		Lus10000369 [exp]	4.5	0.8566
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032660 [exp]	5.5	0.8196
AT1G22930			T-complex protein 11 (.1.2)		Lus10015468 [exp]	7.1	0.8662
AT2G46060			transmembrane protein-related ...		Lus10018827 [exp]	12.2	0.8009
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Lus10032413 [exp]	13.3	0.8105
AT1G17450			B-block binding subunit of TFI...		Lus10022088 [exp]	13.5	0.7736
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10001114 [exp]	15.0	0.8763
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10036455 [exp]	15.1	0.8124

Compare expression of checked genes

Lus10016702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.