Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37820 134 / 2e-39 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) AT5G37810 134 / 3e-39 NIP4;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) AT4G18910 84 / 6e-20 ATNLM2, NIP1;2, NLM2 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) AT1G31885 82 / 3e-19 NIP3;1 NOD26-like intrinsic protein 3;1 (.1) AT4G19030 79 / 2e-18 ATNLM1, AT-NLM1, NLM1, NIP1;1 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) AT1G80760 70 / 6e-15 NLM7, NIP6;1 NOD26-like intrinsic protein 6;1 (.1) AT2G34390 68 / 3e-14 NIP2;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 2;1 (.1) AT3G06100 67 / 8e-14 NIP7;1, NLM8, NLM6 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) AT4G10380 64 / 1e-12 AtNIP5;1, NIP5;1, NLM6, NLM8 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) AT2G29870 45 / 1e-06 Aquaporin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035999 [exp] 201 / 6e-66 AT5G37810 343 / 9e-120 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Lus10007322 [exp] 120 / 3e-35 AT4G18910 276 / 2e-94 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10029274 [exp] 120 / 4e-34 AT4G18910 382 / 6e-135 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10041674 [exp] 79 / 9e-19 AT1G80760 283 / 5e-97 NOD26-like intrinsic protein 6;1 (.1) Lus10024066 [exp] 77 / 1e-17 AT1G80760 416 / 2e-147 NOD26-like intrinsic protein 6;1 (.1) Lus10028520 [exp] 78 / 3e-17 AT5G37820 215 / 4e-64 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Lus10041222 [exp] 74 / 2e-16 AT3G06100 275 / 3e-92 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) Lus10020929 [exp] 72 / 1e-15 AT4G19030 219 / 6e-70 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) Lus10041675 [exp] 68 / 9e-15 AT1G80760 247 / 9e-83 NOD26-like intrinsic protein 6;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G112900 [exp] 143 / 4e-43 AT5G37810 332 / 2e-115 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Potri.017G128200 [exp] 132 / 1e-38 AT5G37820 350 / 3e-122 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Potri.004G063000 [exp] 122 / 5e-35 AT4G18910 386 / 4e-136 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.011G072100 [exp] 121 / 2e-34 AT4G18910 406 / 3e-144 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.017G083300 [exp] 86 / 4e-21 AT4G18910 229 / 2e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.002G097000 [exp] 77 / 1e-17 AT4G18910 229 / 3e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.001G046800 [exp] 77 / 1e-17 AT1G80760 371 / 1e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.003G180900 [exp] 77 / 2e-17 AT1G80760 370 / 2e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.011G146900 [exp] 68 / 4e-14 AT4G10380 450 / 4e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.001G455000 [exp] 63 / 3e-12 AT4G10380 447 / 7e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10016703 pacid=23149097 polypeptide=Lus10016703 locus=Lus10016703.g ID=Lus10016703.BGIv1.0 annot-version=v1.0 ATGGTCATGGTTTACTCCCTCGGCCATATTTCCGGCGCCCATTTCAATCCTGCCGTCACCATTACTTTCGCCATTTTCAGAAAGTTCCCTCCCAAGCATG TTCCGTTCTACATGGCATCACAAGAACTAGGATCCACAATGGCAAGTGGGACTCTGTGTCTTCTATTCCACATTCCAGAAGATGCCTATTTCAGGACAAG CCGTCGGCGAACTCGCCGGAATCGCTGTCGGAATGACGATTACGTATCTGGAGCATCCATGAATCCAGCAAGGAGTCTACGCCCAACAATCGTGATGAAT ACATACGAAGGGATATGGGTTTATATAATTGGGCCACCTATCGGTACAATACTGGGAGGCTTCGCTTACAACCTCATTAGACATACCAACAAACCTCTTA GTGAGTTAACCAAGAGTGCTACCCTTATGAGGAACGTTAGGGCATCATAA
AA sequence Show only first row Show all	>Lus10016703 pacid=23149097 polypeptide=Lus10016703 locus=Lus10016703.g ID=Lus10016703.BGIv1.0 annot-version=v1.0 MVMVYSLGHISGAHFNPAVTITFAIFRKFPPKHVPFYMASQELGSTMASGTLCLLFHIPEDAYFRTSRRRTRRNRCRNDDYVSGASMNPARSLRPTIVMN TYEGIWVYIIGPPIGTILGGFAYNLIRHTNKPLSELTKSATLMRNVRAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37810		NIP4;1, NLM4	NOD26-LIKE MIP 4, NOD26-like i...		Lus10016703 [exp]	0	1
					Lus10007197 [exp]	2.4	0.8753
					Lus10013654 [exp]	7.7	0.8958
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	15.6	0.8832
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	18.6	0.8795
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	21.9	0.8780
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	25.2	0.8762
					Lus10006075 [exp]	26.5	0.8741
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	27.4	0.8752
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002019 [exp]	29.2	0.8733
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10012743 [exp]	32.3	0.8690

Compare expression of checked genes

Lus10016703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.