Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71090 445 / 4e-156 Auxin efflux carrier family protein (.1) AT5G01990 192 / 1e-57 Auxin efflux carrier family protein (.1) AT1G76520 120 / 7e-31 Auxin efflux carrier family protein (.1.2) AT2G17500 102 / 2e-24 Auxin efflux carrier family protein (.1.2.3.4) AT5G65980 102 / 3e-24 Auxin efflux carrier family protein (.1) AT1G20925 92 / 1e-20 Auxin efflux carrier family protein (.1) AT1G76530 63 / 8e-11 Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036000 [exp] 586 / 0 AT1G71090 486 / 3e-172 Auxin efflux carrier family protein (.1) Lus10002280 [exp] 166 / 1e-48 AT1G71090 324 / 9e-109 Auxin efflux carrier family protein (.1) Lus10035610 [exp] 166 / 1e-47 AT5G01990 605 / 0.0 Auxin efflux carrier family protein (.1) Lus10003240 [exp] 166 / 6e-46 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1) Lus10012708 [exp] 112 / 4e-28 AT5G65980 494 / 2e-175 Auxin efflux carrier family protein (.1) Lus10025166 [exp] 109 / 7e-27 AT1G76520 455 / 8e-160 Auxin efflux carrier family protein (.1.2) Lus10001303 [exp] 107 / 3e-26 AT5G65980 491 / 6e-174 Auxin efflux carrier family protein (.1) Lus10035978 [exp] 107 / 5e-26 AT5G65980 486 / 2e-172 Auxin efflux carrier family protein (.1) Lus10002281 [exp] 97 / 3e-25 AT1G71090 103 / 1e-27 Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G127700 [exp] 484 / 2e-171 AT1G71090 660 / 0.0 Auxin efflux carrier family protein (.1) Potri.010G115200 [exp] 470 / 3e-166 AT1G71090 607 / 0.0 Auxin efflux carrier family protein (.1) Potri.004G093200 [exp] 403 / 1e-139 AT1G71090 513 / 1e-180 Auxin efflux carrier family protein (.1) Potri.017G122400 [exp] 401 / 8e-139 AT1G71090 580 / 0.0 Auxin efflux carrier family protein (.1) Potri.016G141700 [exp] 190 / 7e-57 AT5G01990 622 / 0.0 Auxin efflux carrier family protein (.1) Potri.006G112200 [exp] 177 / 2e-52 AT5G01990 602 / 0.0 Auxin efflux carrier family protein (.1) Potri.001G456400 [exp] 120 / 1e-30 AT1G76520 419 / 1e-145 Auxin efflux carrier family protein (.1.2) Potri.001G456300 [exp] 111 / 2e-27 AT1G76520 382 / 5e-131 Auxin efflux carrier family protein (.1.2) Potri.011G145600 [exp] 107 / 4e-26 AT1G76520 368 / 2e-125 Auxin efflux carrier family protein (.1.2) Potri.005G099300 [exp] 105 / 2e-25 AT2G17500 475 / 2e-167 Auxin efflux carrier family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10016704 pacid=23149161 polypeptide=Lus10016704 locus=Lus10016704.g ID=Lus10016704.BGIv1.0 annot-version=v1.0 ATGACTGCCTTTGGAAACACTGGAAATCTGCCCCTAGCAATTGTTGGATCTGTTTGTCATAGTAAAGACAACCCATTTGGTCCCCATTGTCACTCTAGAG GTGTTGCTTATGTCTCTTTTTCCCAGTGGGTCGCTGTTATTCTTGTTTATACATTTGTTTATCATATGATGGAGCCACCACTGGAGTACTATGAGATTGT TGAGGACGAGATTGAAGAGGTCGGGCCTTCTGAAGATGTCAGCAGGCCTCTCCTTGTAGAAGCTGAATGGCCAGGTATGGAAGACAAAGAAACTGAGCAT TCCAAGTCACCGTTTATTGCCAGGGTCTTCAATAGCATCTCTTCTCTATCACAGACCAACTTCCCGGATCTTGATATGTCGGTTGAAACTTGTCCCACTA GTCCCAGGTCAATTAGGTGTCTGGCTGAGCCTAGAGTTGTGAGGAAGATGAGGGATCTAGCTGATCAAACTCCCATACAGCATATACTTCAACCTCCGAC TATTGCGTCTCTGTTAGCCATCATTATTGGGACAGTACCTCAGCTCAGAGCATTTGTGTTTGGAAATGATGCTCCACTTTCTTTCATTAAGGACAGTTTC GAAATCTTAGGTGGTGCCATGGTACCTTCTGTGATGCTTGTTCTTGGTGGTATGCTTGCTGAGGGGCCTAACGACTCGACTATTGGTCTTCGAACGACAA TAGGGGTTACGGTAGCAAGGCTATTGTTGCTTCCACTACTGGGAATTGGGGTTGTTGCTGTTGCTGACAAATTACAGTTACTAGGACAGGCAGATGATGC CATGTACAGATTTGTGCTGTTTATGCAATACACAACCCCAAGTGCCATTTTATTAGGAGCAATTGCCAGTCTCAGAGGCTATGCAGTGAAGGAGGCTTCT GCTCTTCTCTTCTGGCAACATGTGTTTGCACTCTTTTCCCTTTCTATATACATTGTTATCTACTTCAAATTGCTTTCCAGTGTTTGA
AA sequence Show only first row Show all	>Lus10016704 pacid=23149161 polypeptide=Lus10016704 locus=Lus10016704.g ID=Lus10016704.BGIv1.0 annot-version=v1.0 MTAFGNTGNLPLAIVGSVCHSKDNPFGPHCHSRGVAYVSFSQWVAVILVYTFVYHMMEPPLEYYEIVEDEIEEVGPSEDVSRPLLVEAEWPGMEDKETEH SKSPFIARVFNSISSLSQTNFPDLDMSVETCPTSPRSIRCLAEPRVVRKMRDLADQTPIQHILQPPTIASLLAIIIGTVPQLRAFVFGNDAPLSFIKDSF EILGGAMVPSVMLVLGGMLAEGPNDSTIGLRTTIGVTVARLLLLPLLGIGVVAVADKLQLLGQADDAMYRFVLFMQYTTPSAILLGAIASLRGYAVKEAS ALLFWQHVFALFSLSIYIVIYFKLLSSV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71090			Auxin efflux carrier family pr...		Lus10016704 [exp]	0	1
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10017354 [exp]	2.0	0.9276
AT1G18460			alpha/beta-Hydrolases superfam...		Lus10042972 [exp]	4.0	0.9194
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10018812 [exp]	4.5	0.9078
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10001544 [exp]	4.6	0.8961
AT3G03610			ELMO/CED-12 family protein (.1...		Lus10009523 [exp]	8.1	0.9237
AT5G13240			transcription regulators (.1)		Lus10013491 [exp]	14.7	0.8944
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10019837 [exp]	16.4	0.9221
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026142 [exp]	19.6	0.9002
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10032710 [exp]	21.0	0.8795
AT1G25520			Uncharacterized protein family...		Lus10034293 [exp]	22.7	0.8856

Compare expression of checked genes

Lus10016704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.