Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71090 133 / 3e-37 Auxin efflux carrier family protein (.1) AT5G01990 86 / 8e-20 Auxin efflux carrier family protein (.1) AT5G65980 69 / 7e-14 Auxin efflux carrier family protein (.1) AT1G20925 68 / 1e-13 Auxin efflux carrier family protein (.1) AT2G31610 65 / 8e-13 Ribosomal protein S3 family protein (.1) AT5G35530 65 / 9e-13 Ribosomal protein S3 family protein (.1) AT3G53870 63 / 5e-12 Ribosomal protein S3 family protein (.1) AT2G17500 63 / 6e-12 Auxin efflux carrier family protein (.1.2.3.4) AT1G76520 62 / 2e-11 Auxin efflux carrier family protein (.1.2) AT1G76530 59 / 2e-10 Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036001 [exp] 204 / 2e-68 AT1G71090 131 / 3e-37 Auxin efflux carrier family protein (.1) Lus10002280 [exp] 129 / 2e-36 AT1G71090 324 / 9e-109 Auxin efflux carrier family protein (.1) Lus10004059 [exp] 126 / 2e-34 AT1G71090 234 / 3e-72 Auxin efflux carrier family protein (.1) Lus10035610 [exp] 84 / 3e-19 AT5G01990 605 / 0.0 Auxin efflux carrier family protein (.1) Lus10003240 [exp] 84 / 4e-19 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1) Lus10030503 [exp] 67 / 1e-13 AT5G35530 411 / 2e-147 Ribosomal protein S3 family protein (.1) Lus10033442 [exp] 67 / 1e-13 AT2G31610 413 / 3e-148 Ribosomal protein S3 family protein (.1) Lus10012857 [exp] 66 / 6e-13 AT2G31610 411 / 3e-147 Ribosomal protein S3 family protein (.1) Lus10030502 [exp] 66 / 6e-13 AT5G35530 411 / 2e-147 Ribosomal protein S3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G115200 [exp] 156 / 8e-46 AT1G71090 607 / 0.0 Auxin efflux carrier family protein (.1) Potri.008G127700 [exp] 154 / 4e-45 AT1G71090 660 / 0.0 Auxin efflux carrier family protein (.1) Potri.004G093200 [exp] 137 / 1e-38 AT1G71090 513 / 1e-180 Auxin efflux carrier family protein (.1) Potri.017G122400 [exp] 136 / 2e-38 AT1G71090 580 / 0.0 Auxin efflux carrier family protein (.1) Potri.016G141700 [exp] 87 / 3e-20 AT5G01990 622 / 0.0 Auxin efflux carrier family protein (.1) Potri.006G112200 [exp] 83 / 9e-19 AT5G01990 602 / 0.0 Auxin efflux carrier family protein (.1) Potri.005G099300 [exp] 66 / 6e-13 AT2G17500 475 / 2e-167 Auxin efflux carrier family protein (.1.2.3.4) Potri.018G049100 [exp] 64 / 9e-13 AT5G35530 424 / 8e-153 Ribosomal protein S3 family protein (.1) Potri.006G222100 [exp] 64 / 1e-12 AT5G35530 425 / 5e-153 Ribosomal protein S3 family protein (.1) Potri.015G071700 [exp] 64 / 1e-12 AT5G35530 421 / 3e-151 Ribosomal protein S3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10016705 pacid=23149101 polypeptide=Lus10016705 locus=Lus10016705.g ID=Lus10016705.BGIv1.0 annot-version=v1.0 ATGGCTAAGGATTCGAGCTTCAATGAGATGGCGACTCAGATGAGCAAGAAGCTCAAGGTTATGCAGTTTGTCACTGACGGAGTGTTCTTTGCCGAGCTAA ACGAGGTTTTGATCAGAGAGCTCGCTGAGGATGGTTACTCCGGTTTTGAGGGGGAAACGGAGTCAGTCTCAATCAACCAAGGATTTGAGCGGAAGATGGT TAGTGATTTGGGGATATTCTTTGGTCATAATCGAATCATGTCTGATGGGGAAAACCTGCTCACTGCTATTGTTCCGCTGCTTAAACTTCTGTCAATTACT GTAATTGGATTGATTCTAGCCCACCCAGGAAAGCAAATTATCCCCAGATCGACTTTCAAGCTCCTGAGTAAGCTTGTGTTTGCACTATTTCTGCCATGTT TGATTTTCACGGAGCTGGGTGAATCAATTACACTCGAAAACATGGCTAAGTGGTGGTTCATCCCAGTCAATGTTGTGATTAGCACGGCAATTGGTATCTT ACTTGGAGTTTGGAGTCTTGGTTGTGGTTATATGTCGTCCTCCTCCACAGCTGAATAG
AA sequence Show only first row Show all	>Lus10016705 pacid=23149101 polypeptide=Lus10016705 locus=Lus10016705.g ID=Lus10016705.BGIv1.0 annot-version=v1.0 MAKDSSFNEMATQMSKKLKVMQFVTDGVFFAELNEVLIRELAEDGYSGFEGETESVSINQGFERKMVSDLGIFFGHNRIMSDGENLLTAIVPLLKLLSIT VIGLILAHPGKQIIPRSTFKLLSKLVFALFLPCLIFTELGESITLENMAKWWFIPVNVVISTAIGILLGVWSLGCGYMSSSSTAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71090			Auxin efflux carrier family pr...		Lus10016705 [exp]	0	1
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10009324 [exp]	1.0	0.8880
AT5G06560			Protein of unknown function, D...		Lus10012288 [exp]	3.5	0.8362
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10021176 [exp]	4.5	0.8291
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10042973 [exp]	9.2	0.8298
AT4G32350			Regulator of Vps4 activity in ...		Lus10023635 [exp]	11.8	0.8093
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10041421 [exp]	11.8	0.8035
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10036657 [exp]	13.4	0.7941
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10026688 [exp]	16.7	0.7897
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10011568 [exp]	16.7	0.8235
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	17.8	0.8150

Compare expression of checked genes

Lus10016705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.