Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48760 899 / 0 PAT4, DELTA-ADR PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) AT1G23900 102 / 4e-22 GAMMA-ADAPTIN 1, GAMMA-AD, GAMMA-ADR, GAMMA-ADAPTIN1 gamma-adaptin 1 (.1.2) AT1G31730 100 / 4e-21 Adaptin family protein (.1) AT5G22770 97 / 2e-20 ALPHA-ADR alpha-adaptin (.1.2.3) AT5G22780 97 / 4e-20 Adaptor protein complex AP-2, alpha subunit (.1) AT1G60070 91 / 2e-18 Adaptor protein complex AP-1, gamma subunit (.1.2) AT1G23940 63 / 6e-10 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036002 [exp] 1712 / 0 AT1G48760 917 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Lus10035683 [exp] 103 / 3e-22 AT1G31730 1343 / 0.0 Adaptin family protein (.1) Lus10035684 [exp] 103 / 4e-22 AT1G31730 1312 / 0.0 Adaptin family protein (.1) Lus10037272 [exp] 102 / 6e-22 AT1G31730 1341 / 0.0 Adaptin family protein (.1) Lus10037271 [exp] 102 / 9e-22 AT1G31730 1278 / 0.0 Adaptin family protein (.1) Lus10020522 [exp] 94 / 3e-19 AT5G22780 1689 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10005371 [exp] 94 / 4e-19 AT5G22780 1679 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10030848 [exp] 91 / 3e-18 AT1G60070 1288 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10019520 [exp] 91 / 4e-18 AT5G22780 1672 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G045600 [exp] 1144 / 0 AT1G48760 870 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.012G055000 [exp] 1129 / 0 AT1G48760 815 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.006G092800 [exp] 118 / 8e-27 AT1G60070 1356 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.016G104700 [exp] 116 / 2e-26 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.004G235200 [exp] 101 / 1e-21 AT1G31730 1392 / 0.0 Adaptin family protein (.1) Potri.004G189700 [exp] 99 / 1e-20 AT5G22770 1659 / 0.0 alpha-adaptin (.1.2.3) Potri.009G150300 [exp] 92 / 1e-18 AT5G22780 1640 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Potri.006G273300 [exp] 44 / 0.0006 AT4G31480 1657 / 0.0 Coatomer, beta subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region
Representative CDS sequence Show only first row Show all	>Lus10016706 pacid=23149092 polypeptide=Lus10016706 locus=Lus10016706.g ID=Lus10016706.BGIv1.0 annot-version=v1.0 ATGGAGTCGCTTTTTCAGCGTAATCTCGACGACATCATCAAGGGGCTCCGGCACCAGCAAGCTGGGGACTCAGTTTTCATCTCTAAGGTCCTCGAAGAAA TCCGCCGCGAGATCAAATCCACTGACTTGCACACTAAATCAACCGCCCTTCACAAGCTCACTTATCTTCACTCCATTCATTTCCTCGACATGTCTTGGGC TGCCTTTCATGCCATCGAATGCATTTCCTCCTCTAATTTCTCCCACAAGAAGATCGGATACCTCGCTATCTCCCAGTCCTTCCACGAATCCACCCCTGTC ATCTTGTTGATCACCAACCAGTTGCGCAAGGATCTCAAGTCTAATACAGAGGCCGAGATCAGTTTAGCCCTAGAATGCCTTTCCAGAACTGGTAACCTTG ATTTATGTAGAGATCTTACCCCTGAAGTCTTCAATTTGATGGCCACTTCTAAAATTGTCGTCAAGAAGAAAGCTATAGGTTTGCTTTTGAGGGTTTTTGG GAAATATCCAGATTCTGTCCGGGTGTGTTTTAAGAGGTTGGTGGAGAGTTTAGAGACTGACGACTCCCCCCCGCAGATTGTGTCCGCTGTTATTGGGGTA TTCTGCGAGCTTGCTTCCAGAGACCCGAGGGCATATCTTCCCTTGGCACCTGAGTTTTATAAGATTTTGGTTAACTCTAGGAATAATTGGGTCTTGATCA AAGTGTTGAAGATTTTCACTAAGTTGGCTCCTCTAGAACCCAGGTTGGCTAACAAGATTGTGGATCCTATTTGTGAGCTTATGCGGAAGACTGGGGCTAA ATCATTGATGTTTGAGTGTATCAGGACAATCTTGACTAGCTTGACCGACTATGAATCTGCAGTTAGGCTTTCAGCTGGAAGAATTAATGAGCTACTGGTG GATGAGGATCCTAACCTCAGGTATCTTGGATTGCATGCTTTGGCGTTAATTGCACCCAAGTATATATGGGCAGTACTGGAGAACAAGGAGGTTGTAATCA AATCTTTAAGTGATGCAGATCCTAACATCAAACTTGAATCTTTGCGCCTAGTTATGGCAATGATGTCTGACAGTAATGTAGTTGAGATTTGCCGGGTCTT GATGAACTATGCCGCTAAATCTGAGCCCGAGTTTTGCAATCAGATTCTTGGTTCTATGTTGTCGACTTGTTCCCATAACGTGTATGAGATTGTAGTTGAT TTTGACTGGTATGTCTCCCTTCTAGGTGAAATGTCGAGGATTCAACATTGCCAAAAGGGCGAAGAAATTGAAAATCAGCTTATCGACATAGCCATGAGGG TCAAGGATGTTAGACCAGAGCTTGTCCGTGTTGGGCATGATCTTGTAATTGATCCTGCATTACTTGGTAATTCTTTCCTGCACCGGATCTTATCATCTGC TGCTTGGGTATGTGGGGAGTATGTGGAGTTTATTAGAAGGCCAGTTGAACTTGTGGAGTCACTCTTACAGCCTCGAACTAGTCTCTTACCTACATCAGTG AGAGCTGTGTATTTGGAGTCAGCTTTTAAAGCATTAGTATTTTGTCTTCATTCTTACATACTGAATGCATCTAGCAAAGGAGAATTGTCAGAACTAGCTA CAGACCAGGTATTTAATCCTCGAGTATCAGATCATTCAAATGGTGATATTTCTGGTGCAGATGGAGAAACCAGTCAGGCCTATAGATGTAATCTTGTGGA GGAAAAGTATATGACGTCTGATCCCATTCTTTACCTGTTTAACTTGATTGACCTGGCTGTGAGCCCGCTATCAGGTAGCTATGATGTGGAAATACAGGAA AGGACAAGAAACATACTTGGTTTTGTAGAGTTGGTTAGGCCACAACTGTCTAATTCTTCTAGTCCAGAAGATGCTGAATTTAAAGAAGGCAAAGCTTCAA TGATGGTCAGATTTTTACATGATACATTTTTGAATGAGTTAGGCCCAATCTCGACAAGTGCTCAGGGGAGAGTTCTCATACCAGATGGACTAGTGCTTCA TGAGAATCTTGCTGATTTGGAAGCAGTATGTGGAAGCAGTGAGGTACCACCTGCACCAGGTCCTGTCTCTCTGGACAATGAAGAAGGTGATAGCATCTTC ACCTCCGATCACAAAGAAAAATCAGAACTTTCAACAGAGTCCACTTCCTTGCTTGTTGAGCACCGTAAAAGGCATGTATTATACTATCTATCTCCGGAGA CTGATGAACATGTAGAAAATGATTATCCGCCTGCCAATGAGCTCAAATCAGGTATTGGCATTAGTGATGATGCTGAAGATCTGGTTAAGATTGCACAACA GTCGTTTCTACCGAAGAGAAAGTCGAAACAGGTGAAGGCTAGGCCAGTTGTAGTGAAGTTGGATGAAGGAGATACGGATATTACTTCAAGGAAACCTGAA GCTAAGGATGATTCAGTATCTGACGCTGTTAGAGATGTTCTTTTAGGTAATGAAGCTGAAGCTGGTTCTTCAAGACAGCAATCGCCTGCTATTACTTTAC TTGATAAGAAAAAAGGGAAAGTAAAACTGAATGCAGAGGGGCAAAATCAAGATTCGGAGAAGGTGGATTCTCAACAACAGGTTACTGCCAAGGACAGAAG TAAAAGGTCAGGGAAGAAGGATGGCGAGCACAAGGACAAAGCCGGCGATACAGAAAAGCAAAAGAGAAAACATCGACATGGTAGGCATAAAGCACGAGCA ACTAGCAACGTGACTGCACAAACTCCTGTAATTCCGGATTTACTTCTATAG
AA sequence Show only first row Show all	>Lus10016706 pacid=23149092 polypeptide=Lus10016706 locus=Lus10016706.g ID=Lus10016706.BGIv1.0 annot-version=v1.0 MESLFQRNLDDIIKGLRHQQAGDSVFISKVLEEIRREIKSTDLHTKSTALHKLTYLHSIHFLDMSWAAFHAIECISSSNFSHKKIGYLAISQSFHESTPV ILLITNQLRKDLKSNTEAEISLALECLSRTGNLDLCRDLTPEVFNLMATSKIVVKKKAIGLLLRVFGKYPDSVRVCFKRLVESLETDDSPPQIVSAVIGV FCELASRDPRAYLPLAPEFYKILVNSRNNWVLIKVLKIFTKLAPLEPRLANKIVDPICELMRKTGAKSLMFECIRTILTSLTDYESAVRLSAGRINELLV DEDPNLRYLGLHALALIAPKYIWAVLENKEVVIKSLSDADPNIKLESLRLVMAMMSDSNVVEICRVLMNYAAKSEPEFCNQILGSMLSTCSHNVYEIVVD FDWYVSLLGEMSRIQHCQKGEEIENQLIDIAMRVKDVRPELVRVGHDLVIDPALLGNSFLHRILSSAAWVCGEYVEFIRRPVELVESLLQPRTSLLPTSV RAVYLESAFKALVFCLHSYILNASSKGELSELATDQVFNPRVSDHSNGDISGADGETSQAYRCNLVEEKYMTSDPILYLFNLIDLAVSPLSGSYDVEIQE RTRNILGFVELVRPQLSNSSSPEDAEFKEGKASMMVRFLHDTFLNELGPISTSAQGRVLIPDGLVLHENLADLEAVCGSSEVPPAPGPVSLDNEEGDSIF TSDHKEKSELSTESTSLLVEHRKRHVLYYLSPETDEHVENDYPPANELKSGIGISDDAEDLVKIAQQSFLPKRKSKQVKARPVVVKLDEGDTDITSRKPE AKDDSVSDAVRDVLLGNEAEAGSSRQQSPAITLLDKKKGKVKLNAEGQNQDSEKVDSQQQVTAKDRSKRSGKKDGEHKDKAGDTEKQKRKHRHGRHKARA TSNVTAQTPVIPDLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Lus10016706 [exp]	0	1
AT5G65950			unknown protein		Lus10041289 [exp]	3.7	0.8922
AT4G24530			O-fucosyltransferase family pr...		Lus10015890 [exp]	4.0	0.8610
AT2G26260		AT3BETAHSD/D2	3beta-hydroxysteroid-dehydroge...		Lus10010311 [exp]	4.2	0.8568
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10012332 [exp]	6.9	0.8717
AT5G16210			HEAT repeat-containing protein...		Lus10009154 [exp]	7.4	0.8972
AT5G38690			Zinc-finger domain of monoamin...		Lus10033539 [exp]	8.5	0.8782
AT1G73450			Protein kinase superfamily pro...		Lus10042297 [exp]	9.8	0.8811
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Lus10038742 [exp]	14.6	0.8884
AT3G11960			Cleavage and polyadenylation s...		Lus10013542 [exp]	21.1	0.8797
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Lus10036002 [exp]	21.4	0.8563

Compare expression of checked genes

Lus10016706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.