Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18170 349 / 1e-116 Glycosyltransferase family 61 protein (.1) AT3G18180 347 / 1e-114 Glycosyltransferase family 61 protein (.1) AT3G10320 232 / 7e-70 Glycosyltransferase family 61 protein (.1) AT2G41640 232 / 1e-69 Glycosyltransferase family 61 protein (.1.2) AT3G57380 222 / 7e-66 Glycosyltransferase family 61 protein (.1) AT2G03360 189 / 3e-54 Glycosyltransferase family 61 protein (.1.2) AT2G03370 189 / 6e-54 Glycosyltransferase family 61 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036003 [exp] 933 / 0 AT3G18180 360 / 2e-119 Glycosyltransferase family 61 protein (.1) Lus10032459 [exp] 432 / 2e-145 AT3G18180 283 / 2e-88 Glycosyltransferase family 61 protein (.1) Lus10032460 [exp] 418 / 1e-141 AT3G18180 308 / 2e-100 Glycosyltransferase family 61 protein (.1) Lus10042956 [exp] 395 / 1e-132 AT3G18180 283 / 6e-91 Glycosyltransferase family 61 protein (.1) Lus10042954 [exp] 364 / 6e-123 AT3G18170 266 / 4e-87 Glycosyltransferase family 61 protein (.1) Lus10032457 [exp] 350 / 2e-117 AT3G18180 248 / 1e-78 Glycosyltransferase family 61 protein (.1) Lus10032454 [exp] 276 / 2e-89 AT3G18170 197 / 6e-61 Glycosyltransferase family 61 protein (.1) Lus10035441 [exp] 244 / 5e-74 AT2G41640 560 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10031057 [exp] 240 / 3e-72 AT2G41640 543 / 0.0 Glycosyltransferase family 61 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G042300 [exp] 464 / 1e-158 AT3G18170 438 / 1e-150 Glycosyltransferase family 61 protein (.1) Potri.015G042200 [exp] 452 / 6e-155 AT3G18180 441 / 3e-151 Glycosyltransferase family 61 protein (.1) Potri.012G051500 [exp] 431 / 9e-146 AT3G18170 451 / 1e-155 Glycosyltransferase family 61 protein (.1) Potri.016G057000 [exp] 241 / 4e-73 AT2G41640 584 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.006G048500 [exp] 235 / 1e-70 AT2G41640 604 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.010G162200 [exp] 197 / 3e-57 AT2G03360 407 / 3e-139 Glycosyltransferase family 61 protein (.1.2) Potri.010G162100 [exp] 192 / 5e-55 AT2G03360 371 / 1e-124 Glycosyltransferase family 61 protein (.1.2) Potri.008G092700 [exp] 187 / 3e-53 AT2G03360 377 / 1e-127 Glycosyltransferase family 61 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04577 [flax] [poplar] DUF563 Protein of unknown function (DUF563)
Representative CDS sequence Show only first row Show all	>Lus10016707 pacid=23149036 polypeptide=Lus10016707 locus=Lus10016707.g ID=Lus10016707.BGIv1.0 annot-version=v1.0 ATGATGATGTATGATAGCTTGTTGGCAAGAAGCTTCAGCAAACATGAACAGAAGAAGATGCGAACAGGGGCACTCATCACTTGCCTCCTCATTGTCATCA CCTTTTCTTCCATTCTCAAGCCTCAATTGCCTCCTCTTTCTTCTTCCTGCTTGAAGTTTGGGTGGTCTCCTGGAGTTGCCCACAAGTTGAATCTGATCAA TCATACAGACCCCAGCTCTCTAATTCATCTTGAAAATATGAAGAGTACTGACATCATAAGCCATCCCAGCATTCCTACTACATCAATGGAGAATCATACA AGCAGCTTCATCATGCAACACCCGCCTAATGATGGCAGAGTGAGAAGAAAAGATCCTGCCGTTGTCAAAGATACCAACAACTCTGAGCAATTAAAGGAAG AGGTTGTGAAGAAACAGAAGCAAATAGTTCGGTCAAGAAGAACGTGTCGTACAGGAGGAAGATCAGAGTTCTGTGACATGGAAGGAGATGTAAGGGTTGA TCCCAATTCAGCCACCGTTTACTATGTTATTCCATCAAACACCGCGACGACGAAGACGGCGACGTCGTTGAGGATTAGGCCTTACGGACGGAATGGTGAT AAGGTTCCTATGGGATTAGTAAGAGAGTGGTCGCTCAAAATGGTGGCAGAGGGTGATGATCACGACTTGCCACATTGTTCTCGACTTCATGATTCGCCGG CACTTCTCTTCTCTCTTGGAGGATTTGCCGGAAACTATTTTCATGCATTTACCGATATCCTCGTCCCACTCTTCGCCACCGCCCGCAGCTTCAACGGTCA AGTTCTCCTCCTCGTAACTGACCATCGACCCTGGCTGCTCTCTACTTTCAGAATTTTCTTACAGGCACTGTCCAGCTACAATTCGATTGACATCGACAAT GGTAGGGAAATTCATTGTTTTTCAAGATTAATTTTAGGCTTGAAAGGGAGACATAACATAGAACTGAGCGTCAATCCATCTGAAACTGATTACACAATAA GAGATCTCAGGAAATTCTTGAGAGACACCTACTCCCTCAAGAGACCAACGGCAATCAAATTACCAGCCAGTCATCACAAAAAATTGATTGTGGTGCCTCG CCTTCTCATCATATCTCGTAACAAGACTCGCGCATTCACCAATGTGAATGATATCGCAAGGATGGCAAGGAAACTCGGGTACAGGGTAATAGTTGCCGAG CTAGACAGGAACATGTCGAGGTCAGCCGAGCTTATGAATTCGTGTGATGTAGTGATGGGAGTCCATGGAGCCGGGTTGACGAATATGGTGTTTCTTCCCG AGAATGCAGTGCTGATCCAGGTAGTCCCCGTGGCTGCGAATTTTGTTTCGAGAACCTACTTTGAGGAGCCATCCAAGGATATGAATGTGAGGTATTTGGA GTACAAGATCACAAAGGAAGAGAGCAGTTTGATGGAGCAGTACAAACCCGATGATGTGGTTTTCACCAACCCCTCCTTGTTTATGAAGAAAGGGTGGGAT GCTTTCAAATCCATTTACTTGGACAACCAAAATGTAAAGCTTGACATCACAAGGTTCCGGCGCACGTTATTGAAAGCTTTAGAGCTTTTAAAATAA
AA sequence Show only first row Show all	>Lus10016707 pacid=23149036 polypeptide=Lus10016707 locus=Lus10016707.g ID=Lus10016707.BGIv1.0 annot-version=v1.0 MMMYDSLLARSFSKHEQKKMRTGALITCLLIVITFSSILKPQLPPLSSSCLKFGWSPGVAHKLNLINHTDPSSLIHLENMKSTDIISHPSIPTTSMENHT SSFIMQHPPNDGRVRRKDPAVVKDTNNSEQLKEEVVKKQKQIVRSRRTCRTGGRSEFCDMEGDVRVDPNSATVYYVIPSNTATTKTATSLRIRPYGRNGD KVPMGLVREWSLKMVAEGDDHDLPHCSRLHDSPALLFSLGGFAGNYFHAFTDILVPLFATARSFNGQVLLLVTDHRPWLLSTFRIFLQALSSYNSIDIDN GREIHCFSRLILGLKGRHNIELSVNPSETDYTIRDLRKFLRDTYSLKRPTAIKLPASHHKKLIVVPRLLIISRNKTRAFTNVNDIARMARKLGYRVIVAE LDRNMSRSAELMNSCDVVMGVHGAGLTNMVFLPENAVLIQVVPVAANFVSRTYFEEPSKDMNVRYLEYKITKEESSLMEQYKPDDVVFTNPSLFMKKGWD AFKSIYLDNQNVKLDITRFRRTLLKALELLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18180			Glycosyltransferase family 61 ...		Lus10016707 [exp]	0	1
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10002593 [exp]	2.4	0.8998
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10021428 [exp]	3.6	0.9120
AT1G01700		ATROPGEF2, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036352 [exp]	4.9	0.8853
AT4G05160			AMP-dependent synthetase and l...		Lus10026544 [exp]	6.3	0.8659
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10023855 [exp]	7.5	0.8709
AT1G54940		PGSIP4	plant glycogenin-like starch i...		Lus10031507 [exp]	7.7	0.8428
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036353 [exp]	11.6	0.8817
AT2G30210		LAC3	laccase 3 (.1)		Lus10026401 [exp]	12.5	0.8803
AT1G73340			Cytochrome P450 superfamily pr...		Lus10031295 [exp]	12.7	0.8243
AT2G21100			Disease resistance-responsive ...		Lus10034479 [exp]	13.6	0.8858

Compare expression of checked genes

Lus10016707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.