Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01340 147 / 7e-45 At17.1 unknown protein AT1G66480 132 / 7e-39 PMI2 plastid movement impaired 2 (.1) AT1G71015 119 / 4e-34 unknown protein AT5G37840 117 / 6e-33 unknown protein AT5G62900 40 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036005 [exp] 266 / 5e-91 AT2G01340 174 / 2e-54 unknown protein Lus10043472 [exp] 127 / 6e-37 AT5G37840 134 / 2e-39 unknown protein Lus10009120 [exp] 107 / 3e-28 AT4G18975 198 / 1e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4) Lus10008274 [exp] 45 / 1e-05 AT1G64700 118 / 9e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G128700 [exp] 162 / 1e-50 AT2G01340 206 / 3e-67 unknown protein Potri.010G113800 [exp] 158 / 6e-49 AT2G01340 207 / 1e-67 unknown protein Potri.017G128800 [exp] 135 / 3e-40 AT1G66480 192 / 8e-62 plastid movement impaired 2 (.1) Potri.004G088200 [exp] 135 / 3e-40 AT2G01340 179 / 1e-56 unknown protein Potri.011G153000 [exp] 46 / 2e-06 AT1G64700 160 / 1e-49 unknown protein Potri.001G448500 [exp] 44 / 2e-05 AT1G64700 154 / 3e-47 unknown protein Potri.016G079700 [exp] 42 / 5e-05 AT3G10120 114 / 1e-32 unknown protein Potri.006G213100 [exp] 40 / 0.0002 AT3G10120 122 / 9e-36 unknown protein Potri.004G149800 [exp] 39 / 0.0008 AT5G66580 91 / 7e-24 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016709 pacid=23149057 polypeptide=Lus10016709 locus=Lus10016709.g ID=Lus10016709.BGIv1.0 annot-version=v1.0 ATGGGGAACAGCATCATAGGGGGGGCCAAGTACAGAAGAGCCAAAGTCATGAAAATCGACGGCGAAACCTTCAAGCTCAAAACCCCTGTTCGGGCCGGAG ACGTCTTGAACAACTATCCTGGCCACTGCCTCTTAGAATCCGAATCGGTTAAGCATTACGGTTCGCGGGCCAAGCCGCTTGAACCCAACCAAAATTTACT ACCCAAGAGGCTTTATTTCCTCGTGGAGCTCCCCAACAAGAAGGCGGCGGCGGCGACTGCGGGGCCGTTTGTCGAAAACACGCCGAGAAGGGTATGGTCG GGTCCCATCAGCATGAGTGCCAAGGACAGGCTGGAGAGCATGATGCTGGCGAGGAGATCTGCGTCCGATCTCTCCATGATCATGAAACCGCCGGCTGCCG GCCCCGCTCCCCGCTGTGCTACTCGTGTCCCCGCTCTCTGTCTCTGTTTCCGGCAGCGTTGCCGTGGCCGCGGACGGCGGGGAGGAAGGGTCGTCCACGA TGAGGGTAAAGATGAGGCTCCCCAGGGCAGAGGTGGAGAGATTAATGAGGGAAAGTAG
AA sequence Show only first row Show all	>Lus10016709 pacid=23149057 polypeptide=Lus10016709 locus=Lus10016709.g ID=Lus10016709.BGIv1.0 annot-version=v1.0 MGNSIIGGAKYRRAKVMKIDGETFKLKTPVRAGDVLNNYPGHCLLESESVKHYGSRAKPLEPNQNLLPKRLYFLVELPNKKAAAATAGPFVENTPRRVWS GPISMSAKDRLESMMLARRSASDLSMIMKPPAAGPAPRCATRVPALCLCFRQRCRGRGRRGGRVVHDEGKDEAPQGRGGEINEGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01340		At17.1	unknown protein		Lus10016709 [exp]	0	1
AT5G17740			P-loop containing nucleoside t...		Lus10003213 [exp]	7.7	0.9709
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10017624 [exp]	8.5	0.9767
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10039234 [exp]	9.3	0.9621
AT3G09520		ATEXO70H4	exocyst subunit exo70 family p...		Lus10025291 [exp]	9.7	0.9559
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10002839 [exp]	12.0	0.9694
AT4G37290			unknown protein		Lus10010255 [exp]	13.0	0.9753
AT2G42360			RING/U-box superfamily protein...		Lus10002194 [exp]	14.7	0.9740
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10003148 [exp]	15.1	0.9752
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021455 [exp]	19.4	0.9705
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003266 [exp]	20.6	0.9461

Compare expression of checked genes

Lus10016709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.