Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01660 238 / 2e-77 PDLP6 plasmodesmata-located protein 6 (.1.2) AT5G37660 200 / 2e-62 PDLP7 plasmodesmata-located protein 7 (.1.2) AT1G70690 174 / 2e-52 HWI1, PDLP5 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1) AT3G60720 132 / 3e-36 PDLP8 plasmodesmata-located protein 8 (.1) AT2G33330 77 / 4e-16 PDLP3 plasmodesmata-located protein 3 (.1) AT5G48540 71 / 5e-14 receptor-like protein kinase-related family protein (.1) AT1G04520 70 / 2e-13 PDLP2 plasmodesmata-located protein 2 (.1) AT1G63570 67 / 2e-12 Receptor-like protein kinase-related family protein (.1) AT3G58310 66 / 2e-12 Domain of unknown function (DUF26) (.1) AT3G22060 65 / 5e-12 Receptor-like protein kinase-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036006 [exp] 259 / 3e-84 AT2G01660 233 / 1e-74 plasmodesmata-located protein 6 (.1.2) Lus10020814 [exp] 180 / 1e-54 AT5G37660 311 / 2e-106 plasmodesmata-located protein 7 (.1.2) Lus10010362 [exp] 119 / 2e-30 AT3G60720 259 / 7e-85 plasmodesmata-located protein 8 (.1) Lus10036497 [exp] 107 / 6e-27 AT3G60720 210 / 9e-67 plasmodesmata-located protein 8 (.1) Lus10001052 [exp] 78 / 3e-16 AT5G43980 234 / 1e-75 PLASMODESMATA-LOCATED PROTEIN 1A, plasmodesmata-located protein 1 (.1) Lus10014475 [exp] 74 / 1e-14 AT1G04520 391 / 1e-137 plasmodesmata-located protein 2 (.1) Lus10023726 [exp] 73 / 2e-14 AT1G04520 389 / 2e-136 plasmodesmata-located protein 2 (.1) Lus10018382 [exp] 70 / 7e-13 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 68 / 2e-12 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G133500 [exp] 264 / 3e-87 AT2G01660 332 / 1e-114 plasmodesmata-located protein 6 (.1.2) Potri.010G108100 [exp] 258 / 5e-85 AT2G01660 265 / 2e-88 plasmodesmata-located protein 6 (.1.2) Potri.004G086000 [exp] 216 / 8e-69 AT5G37660 301 / 1e-102 plasmodesmata-located protein 7 (.1.2) Potri.017G130800 [exp] 209 / 5e-66 AT5G37660 314 / 1e-107 plasmodesmata-located protein 7 (.1.2) Potri.014G067000 [exp] 139 / 8e-39 AT3G60720 306 / 8e-105 plasmodesmata-located protein 8 (.1) Potri.002G145400 [exp] 116 / 3e-30 AT3G60720 243 / 8e-80 plasmodesmata-located protein 8 (.1) Potri.002G257300 [exp] 96 / 1e-22 AT1G04520 243 / 2e-79 plasmodesmata-located protein 2 (.1) Potri.010G065800 [exp] 73 / 2e-14 AT1G04520 337 / 2e-116 plasmodesmata-located protein 2 (.1) Potri.008G171700 [exp] 73 / 2e-14 AT1G04520 349 / 3e-121 plasmodesmata-located protein 2 (.1) Potri.002G249600 [exp] 71 / 5e-14 AT5G48540 256 / 7e-86 receptor-like protein kinase-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10016710 pacid=23149123 polypeptide=Lus10016710 locus=Lus10016710.g ID=Lus10016710.BGIv1.0 annot-version=v1.0 ATGGCTAAATCTCTGTCCCCCACTCTAATAATATTCTCTCTACTGCTGGTCGCCGGCGTTTCATCCACATCTATCGACACCTACGTCTACGGTGGCTGCT CTCAACTAAGATACACACCGGGCTCCCCCTACGAGTCAACCCTCAACTCACTCCTCACTTCCCTAGTCAACTCAGCCTCCTTCTCTCTTTACAACAACTT CACTTCTTCTTCCCAATATCCATCCCCAACCATATACGGCCTTTACCAGTGCCGCGGAGACCTCCCTCCCACCGACTGCAGCCGCTGCATAGCCAGGGCC GTCACCCAGCTGGGCACCCTCTGCGCCTCCTCGTGCGGAGGAGCGCTGCAGCTGGACGGCTGCCTCATCAAGTACGACAACGTAACCTTCTTGGGCGTCG AGGACAAGACCGTCTTGTTCCGAAAATGCGGCCCCTACGACTACGACTCTAGTAGTAGTAGCAGTACGTTGTTGGCAAGGAGGAACGCTGTGTTGGATTA CGTGGCGGCAGCAGGCGGAGGCGGAGGAGATGGGTATAGGGTGGGGGGGTCCGGCGAAATTCATGCGGTGGCGCAGTGCGTGCAGGACTTGTCCCGGAGC GAGTGTCAGGATTGTGTTTCTGAAGCGGTTGGGGAGCTTAAGTCCACCTGTGGAGCCTCCGCCTGGGGGGATATGTTCCTCGGCAAGTGCTACGCGCGAT TCTCGGAAGGTGGGGGTCACTCTCGCGGTGGCGGCGGAGGAGGAGACGGTAAGAGCAGTAATAATAGTGATGAAGAGATAGAGAAGACATTGGCAATATT AATCGGACTTATCGCCGGAGTTGCCCTGCTCATCGTCTTCCTTTCCTTCCTCAGAAAACTCTGCGAAAAGGGCAAAGGCACTAGCCAGTGTGGGGGCAGT GGGGCAGCATGCAGTCCCCTCCGGCCAAAGGTGGGCGGAGTTTGTACGTATAAAGAGAGCAAGTGA
AA sequence Show only first row Show all	>Lus10016710 pacid=23149123 polypeptide=Lus10016710 locus=Lus10016710.g ID=Lus10016710.BGIv1.0 annot-version=v1.0 MAKSLSPTLIIFSLLLVAGVSSTSIDTYVYGGCSQLRYTPGSPYESTLNSLLTSLVNSASFSLYNNFTSSSQYPSPTIYGLYQCRGDLPPTDCSRCIARA VTQLGTLCASSCGGALQLDGCLIKYDNVTFLGVEDKTVLFRKCGPYDYDSSSSSSTLLARRNAVLDYVAAAGGGGGDGYRVGGSGEIHAVAQCVQDLSRS ECQDCVSEAVGELKSTCGASAWGDMFLGKCYARFSEGGGHSRGGGGGGDGKSSNNSDEEIEKTLAILIGLIAGVALLIVFLSFLRKLCEKGKGTSQCGGS GAACSPLRPKVGGVCTYKESK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01660		PDLP6	plasmodesmata-located protein ...		Lus10016710 [exp]	0	1
AT3G20650			mRNA capping enzyme family pro...		Lus10003803 [exp]	2.2	0.9537
AT4G18340			Glycosyl hydrolase superfamily...		Lus10028122 [exp]	4.0	0.9529
					Lus10024104 [exp]	4.9	0.9308
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10017910 [exp]	4.9	0.9388
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004546 [exp]	5.2	0.9390
					Lus10042963 [exp]	5.2	0.9307
AT1G79480			Carbohydrate-binding X8 domain...		Lus10000278 [exp]	5.9	0.9319
AT4G18340			Glycosyl hydrolase superfamily...		Lus10042825 [exp]	5.9	0.9387
AT3G26350			unknown protein		Lus10006464 [exp]	9.5	0.9260
AT1G23850			unknown protein		Lus10030860 [exp]	10.2	0.9191

Compare expression of checked genes

Lus10016710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.