Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69940 385 / 3e-133 ATPPME1 Pectin lyase-like superfamily protein (.1) AT5G07410 380 / 2e-131 Pectin lyase-like superfamily protein (.1) AT5G61680 371 / 3e-128 Pectin lyase-like superfamily protein (.1) AT5G07420 338 / 5e-115 Pectin lyase-like superfamily protein (.1) AT5G07430 334 / 2e-113 Pectin lyase-like superfamily protein (.1) AT5G19730 212 / 2e-65 Pectin lyase-like superfamily protein (.1) AT1G05310 209 / 6e-64 Pectin lyase-like superfamily protein (.1) AT2G36710 201 / 1e-60 Pectin lyase-like superfamily protein (.1) AT5G55590 199 / 2e-60 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT5G47500 197 / 7e-60 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036007 [exp] 343 / 2e-119 AT1G69940 196 / 7e-62 Pectin lyase-like superfamily protein (.1) Lus10034893 [exp] 298 / 2e-99 AT5G61680 333 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10012942 [exp] 231 / 7e-73 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009997 [exp] 228 / 1e-71 AT5G19730 320 / 1e-107 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 224 / 5e-71 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 221 / 9e-69 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10010470 [exp] 217 / 5e-67 AT1G05310 521 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 213 / 3e-66 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 214 / 6e-66 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G114900 [exp] 414 / 2e-144 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G114266 [exp] 414 / 2e-144 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G112800 [exp] 414 / 2e-144 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G113533 [exp] 414 / 2e-144 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G113433 [exp] 413 / 3e-144 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.006G186100 [exp] 409 / 1e-142 AT1G69940 412 / 4e-144 Pectin lyase-like superfamily protein (.1) Potri.006G186000 [exp] 409 / 1e-142 AT1G69940 412 / 4e-144 Pectin lyase-like superfamily protein (.1) Potri.015G110700 [exp] 398 / 2e-138 AT1G69940 393 / 2e-136 Pectin lyase-like superfamily protein (.1) Potri.006G137100 [exp] 325 / 2e-109 AT1G69940 355 / 1e-121 Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 237 / 3e-75 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10016711 pacid=23149124 polypeptide=Lus10016711 locus=Lus10016711.g ID=Lus10016711.BGIv1.0 annot-version=v1.0 ATGGTTATTCGAGGAGGAGATCATCTCGTGTTTATAACTGTAGTGTTAACGTTACTAGCAGCTGGGGTAAACAAGATTAGTGCGGACGACTTGACACCGA TCCCAGCGGACAAAGCCCAAGTAGAAGCCTGGTTCAAGGCAAACGTGAAGCCATTAGCAGAGCGCAAGACGACATTGAACGCCACGCTGCTAGCAGCTGA GGCCAACGCAACAACCATCAAGGTTAGACCGGACGGGAGCGGACAATTCACCACCCTAACCGATGCCATCAACAGCATCCCCAGCGGGAACACCCGACGT GTCATCATAGACTTGGGTTCGGGCCTCTACACGGAGAAAGTCATGATCGAGAGATCCAGACCGTTCATTACCCTGATTGGCGATCCAAAGGCCATGCCCA TCTTGCAGTTTGGCGGCACGGCTAGAGAATTCGGAACCGTGTACAGCGCTACTTTACAGATCGAAGCTGATTACTTCGTGGCCACCAACATTATTTTCAA GAACACGGCGCCTAAGCCCGACGGTACGAAGAAGGGAGAACAAGCGCTGGCACTGAGGATCGGAGGACACATGGCGACATTCTACAACTGCAAGTTCCAC GGTTTCCAAGACACTCTTTGTGACGACAGAGGGTGGCATTTCTTCAAGGACTGCTACATCGAAGGAACTGTCGATTACATCTTCGGCAGTGGAACGTCGC TTTACTTGACCACCGAGCTCAAAGTTCTACAAGATGGAAGCTTCGTCACCGCGCAGGCTAGAAACGAACCTGACTCCACGGGCTACTCATTTGTCCACTG TGACATCACTGGGGCCGTTCAGAAGTCCTTCTTGGGCCGGGCTTGGAGTAAGATGCCCAAGACCGCTTTTCTCTACTGTAACATTGGCTCCGTCATCTGC CCCTCTGGCTGGTCCGACAATAATAAACCCGAACGTGATGCGACACTGGACTTCCTTGAGTACAAAAACACGGGGCCAGCTGGGATTGCTACAGATCGTG CTAAATTCAGCAAGCAATTAAGCGACGCTGAAGCGCAACATTACCTTTCTCTAGGCTTTATTCAAGGCTCCTCATGGTTGCTTCCACCTCCAGCATACGT TTAA
AA sequence Show only first row Show all	>Lus10016711 pacid=23149124 polypeptide=Lus10016711 locus=Lus10016711.g ID=Lus10016711.BGIv1.0 annot-version=v1.0 MVIRGGDHLVFITVVLTLLAAGVNKISADDLTPIPADKAQVEAWFKANVKPLAERKTTLNATLLAAEANATTIKVRPDGSGQFTTLTDAINSIPSGNTRR VIIDLGSGLYTEKVMIERSRPFITLIGDPKAMPILQFGGTAREFGTVYSATLQIEADYFVATNIIFKNTAPKPDGTKKGEQALALRIGGHMATFYNCKFH GFQDTLCDDRGWHFFKDCYIEGTVDYIFGSGTSLYLTTELKVLQDGSFVTAQARNEPDSTGYSFVHCDITGAVQKSFLGRAWSKMPKTAFLYCNIGSVIC PSGWSDNNKPERDATLDFLEYKNTGPAGIATDRAKFSKQLSDAEAQHYLSLGFIQGSSWLLPPPAYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10016711 [exp]	0	1
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	2.2	1.0000
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	3.7	1.0000
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	3.9	1.0000
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	4.5	1.0000
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10009926 [exp]	4.9	0.9990
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	5.0	1.0000
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10017911 [exp]	5.5	1.0000
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10038371 [exp]	6.5	1.0000
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10039859 [exp]	6.7	1.0000
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10029564 [exp]	6.9	0.9608

Compare expression of checked genes

Lus10016711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.