Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25120 1245 / 0 ATSRS2 ARABIDOPSIS THALIANA SUPPRESSOR OF RAD SIX-SCREEN MUTANT 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036008 [exp] 318 / 9e-99 AT4G25120 166 / 7e-45 ARABIDOPSIS THALIANA SUPPRESSOR OF RAD SIX-SCREEN MUTANT 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G114100 [exp] 1379 / 0 AT4G25120 1329 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF RAD SIX-SCREEN MUTANT 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00580 [flax] [poplar] UvrD-helicase UvrD/REP helicase N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016712 pacid=23149126 polypeptide=Lus10016712 locus=Lus10016712.g ID=Lus10016712.BGIv1.0 annot-version=v1.0 ATGTCAAACGAAAATGCATATACCGCCAGTACAAAAGTAATCTCGCAAGAGCAAAGATCTCGAATCTCGCAAAACTTCAGAGCTGCTAAGGCTCTTCTTG CTCGTAAACGGCCACGCGATGTCGCTTCTCTCCCGTGTCAATTTTCTCCTTTTAGAGCAAAGGAGATTAAGGCTGCTGAATCACCAGCTACAGTTACCGA CACCAAAAGAGTTCCTCTCTCAGAGATATCAAACAAGAATTCGTCTCCAAAGAGTCTTAATTGTTACACTGAATTGACTCCCATTAGCTGTAGGGCAGGA ACACAACTTTGCAAGGCGGAACCAGCCTGTGATGCTAGGGAAATTTGTTTGAGTGAACGTGCATCAGAATGTTTTGTTACTCCAACTAAACAGCTCGATT TTTCTGGCTTGAGCAGTAGTTATTCTTCTACTCCTGACCTACTGGATGATGATGAATTTGATGAATCTGTTCTGCAAGCAATTGATGCAATATGCGAGGA ACATTCTGCTGCAAAAGTAAAGGACAGTCCAACTCGCAGCCAACATGTGGACACTGCCGAGTCCAACAGCAGTGTTTGTTCTATGTCCGGTGCTGAGGGT AAGCGGCAGAATGTTACGGGAGTTGTTTTGAGCAATGAGGATGACTTTGAATTCAGGATTGGTGATAATAGCAGGTCTCTGACGATGTCATGTGCAGACA TGCCTGAAGACTACTCAAAGTATTTGCAATCTTTGAATGACAGGCAACGTGAAGCAGCTTGTAGTAATATTTCAGTTCCTTTAATGATTGTGGCTGGTCC AGGAAGTGGCAAGACTTCTACAATGGTTGGCCGTGTGCTGATGCTACTCAATAAGGGTATTAGTTCGTCAAACATTTTGGCTATGACTTTCACCACAGCT GCGGCATCTGAGATGAGAGATAGAATAGGTGCAGTGGCAGGGAAAGCCACAGCTAAAGAGCTGACTATCAGCACATTTCATTCGTTTTCCTTGCAACTTT GTAGACTGCATGCTGAGAAGTTGCAGCGGACCCCGGACTTCTTGATATACGGCCATAGCCATCAGAGAAGGGCGATCATTGAGGCTCTCCGGCTACTAGA AAATGAAAACCAACCAATACCAGAAATTGATTCATTGAAACATGCTGAGCATGTTAATATTGGTCCCGAGTGTTTCAAGGATAATGCAAAGAAGTGGCTC AAGTTTGTGACTCAGGCCAAGGCTTCAGGAAAGACTCCTGCACATTATATTAAACTGGGGAATAATATAGGAGCAGCCATCCTTCGGAATTACAATGATA TATTGAGATCCTGCAATTCTTTGGATTACCATGATTTAATCAGCTGTTCTGTAAAGTTGTTGACTGATTTTCCTGAAGTGTTTAAGGAGTGTCAGGATTC ATGGAAAGCAATTCTCGTGGACGAGTTTCAGGATACAAGTGCCATGCAGTATTGTCTTCTGCAACTTCTAGCATCTCATAATCACATAACTATTGTTGGT GACGATGATCAGTCCATTTTCAGCTTTAATGGAGCTGACACTTCTGGGTTTGATTCATTCCGTCAAGATTTTCCAACTCACAAAGAGATCAGACTCAATA AAAACTATCGCTCTACACGATTCATTGTTGAGGCTGCTTCATCTCTTATAAAAAATAACGTGAAACGTTGTGAACTGAAAGATGCTCTCACCGACAATTC TTCAGGGTCAAAGGTAACCATAAAGGAGTGTCAGAATGAGGAATCACAATGTGCATTTGTTGTTGACAAAATACTGGAAACTGTCTCGGATAGCACGTCC GATAAGCCTTCTTTTGGTGAAATAGCCATTCTTTACCGAAGACAGGTATCAGGAAAACCATTCCAAATAGCATTTCGGGACAGGAAAATACCTTTTAATG TTCATGGTGTGGCCTTCTACAGGAAAAAGGTAGTCAAGGTTATTATTGTTATGCTGAGAACGGCAATGCGTGGTTGCGGTGATGACCCATATCGTCGAGC CTTTAAGGCTTTGCTTCCTTTTGACAAAGAAGAAAAAAAGAAGGTTATTAGTCATATTGACAAAATATCAATCTCCAGAAAATGCACTTTTATATCTGCA GCCAGTGACATCTTTACTGCAAAGGTTTCCGGTACCTTTAAGAGGAGTGAACTCACTCAGGGTCGTAAGGTATTATCAACTCTGGAGATGATATCTAAAC TGATTCATAGGGAACAATCAATTTCAGCTGTTATAACTTCGGTGGCCAACATGGTACCTCAGAAATACCTTCTGGAGCAAAGAGCGGTGGTTGATGTTGA CGGAGGGAAATTGCTGAATGAAGACAATGATGTGAGATCTGTTCTTCAGTACCTACTGGACGATGTCACTGCTTTCTTGTCAATGCAAGGTGCTGAAGAA GAGGGAACCTGTATCCCGATGGAAGAAAAGGGCTGTGCTAAGCTGCTGTGTTCATTTCTCGAGTACATAGCAGAGCGGGAGAAAGAGAACTTTCATTCTC GGAGACAAGAAAATCAGAATTCTGTTTCTTTGACCACCATTCATCAGTCAAAAGGATTGGAGTGGGACGTTGTTTTCATAATAAAGGCGAATGATTCAGA AATCCCTTTGTTGTACGAAAACAATGGTGCTGCAAAGGAACATGGAAATTTGATCGAGGAGGAACGTCGTCTATTATATGTGGCAATGACTCGTGCGAGA AAGAAGCTCTTCATTCTTTACGTCACAGTAGATGCCAATTGGCAGATATTGCAACCGTCTCGGTTTCTGATGGAAATTCCAAATCATCTTCTTCAGATTC AGGGAGATGTCAGTCTTCAGGACTTGCACCCAAAATGCCATAGAATTCCTAAAGCAAGCAATGATGATGATCAGCAAGACGAGAAGAAATCTTCTGACGT TCACTTAGATTTTTCAGCTTCGGACGGGACAATGGAAACAATTGAAGCCTACAATTCAAATAGTTTCATAAAGAGGTTCGCTGTAGAGGACAGGTCAGTT GTGTCCCACTTGTTCCATCAGTGGGCAAAGAAGCAAGCCTTCAAAACGCCCAAGAGGTTGCTTCACAAGGTGGGATTTGTCATCGATGAACGCTTGCGGG TGAAGAAAACAAAACACAAGCATGTTTTACAAGAGTTGAAATCATGTTTGAACTGCAACGAGGCATTTCAGTATGCCGAATATGTACTGATGTGGGAAAA TATTCCAGCTGACAAACGGGCTCATATTATGCGAGAGAAACAGGAACACTTCCAGAAATTGAGGATTGAGAAGTCGATGAGTTCATCTGAAGCAACAGCT AAACAGTTTGTTTGGTTGGCGAGCGCAGATTGCATATCTGCAGAACCTGGGATGTACCGTGTCCCCAACATCACGACTTCATGCATGTCGCTTGATTGA
AA sequence Show only first row Show all	>Lus10016712 pacid=23149126 polypeptide=Lus10016712 locus=Lus10016712.g ID=Lus10016712.BGIv1.0 annot-version=v1.0 MSNENAYTASTKVISQEQRSRISQNFRAAKALLARKRPRDVASLPCQFSPFRAKEIKAAESPATVTDTKRVPLSEISNKNSSPKSLNCYTELTPISCRAG TQLCKAEPACDAREICLSERASECFVTPTKQLDFSGLSSSYSSTPDLLDDDEFDESVLQAIDAICEEHSAAKVKDSPTRSQHVDTAESNSSVCSMSGAEG KRQNVTGVVLSNEDDFEFRIGDNSRSLTMSCADMPEDYSKYLQSLNDRQREAACSNISVPLMIVAGPGSGKTSTMVGRVLMLLNKGISSSNILAMTFTTA AASEMRDRIGAVAGKATAKELTISTFHSFSLQLCRLHAEKLQRTPDFLIYGHSHQRRAIIEALRLLENENQPIPEIDSLKHAEHVNIGPECFKDNAKKWL KFVTQAKASGKTPAHYIKLGNNIGAAILRNYNDILRSCNSLDYHDLISCSVKLLTDFPEVFKECQDSWKAILVDEFQDTSAMQYCLLQLLASHNHITIVG DDDQSIFSFNGADTSGFDSFRQDFPTHKEIRLNKNYRSTRFIVEAASSLIKNNVKRCELKDALTDNSSGSKVTIKECQNEESQCAFVVDKILETVSDSTS DKPSFGEIAILYRRQVSGKPFQIAFRDRKIPFNVHGVAFYRKKVVKVIIVMLRTAMRGCGDDPYRRAFKALLPFDKEEKKKVISHIDKISISRKCTFISA ASDIFTAKVSGTFKRSELTQGRKVLSTLEMISKLIHREQSISAVITSVANMVPQKYLLEQRAVVDVDGGKLLNEDNDVRSVLQYLLDDVTAFLSMQGAEE EGTCIPMEEKGCAKLLCSFLEYIAEREKENFHSRRQENQNSVSLTTIHQSKGLEWDVVFIIKANDSEIPLLYENNGAAKEHGNLIEEERRLLYVAMTRAR KKLFILYVTVDANWQILQPSRFLMEIPNHLLQIQGDVSLQDLHPKCHRIPKASNDDDQQDEKKSSDVHLDFSASDGTMETIEAYNSNSFIKRFAVEDRSV VSHLFHQWAKKQAFKTPKRLLHKVGFVIDERLRVKKTKHKHVLQELKSCLNCNEAFQYAEYVLMWENIPADKRAHIMREKQEHFQKLRIEKSMSSSEATA KQFVWLASADCISAEPGMYRVPNITTSCMSLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25120		ATSRS2	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10016712 [exp]	0	1
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10030364 [exp]	6.9	0.8999
AT5G11240			transducin family protein / WD...		Lus10033468 [exp]	7.2	0.8945
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10037870 [exp]	7.7	0.8642
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10028521 [exp]	9.4	0.8510
AT3G04160			unknown protein		Lus10021983 [exp]	12.2	0.8376
AT4G21660			proline-rich spliceosome-assoc...		Lus10011207 [exp]	12.3	0.8550
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10020761 [exp]	13.3	0.8925
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10019336 [exp]	15.9	0.8858
AT1G22660			Polynucleotide adenylyltransfe...		Lus10026711 [exp]	16.1	0.8318
AT1G55750			BSD domain (BTF2-like transcri...		Lus10020465 [exp]	18.0	0.8334

Compare expression of checked genes

Lus10016712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.