Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61670 337 / 5e-116 unknown protein AT5G06130 272 / 2e-90 chaperone protein dnaJ-related (.1.2) AT2G34860 41 / 0.0003 EDA3 embryo sac development arrest 3, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022688 [exp] 270 / 2e-89 AT5G06130 388 / 4e-136 chaperone protein dnaJ-related (.1.2) Lus10016993 [exp] 262 / 2e-86 AT5G06130 404 / 4e-142 chaperone protein dnaJ-related (.1.2) Lus10014223 [exp] 233 / 7e-77 AT5G06130 295 / 1e-102 chaperone protein dnaJ-related (.1.2) Lus10021316 [exp] 219 / 3e-70 AT5G06130 348 / 3e-122 chaperone protein dnaJ-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G114200 [exp] 356 / 2e-123 AT5G61670 380 / 3e-133 unknown protein Potri.006G210500 [exp] 284 / 5e-95 AT5G06130 401 / 2e-141 chaperone protein dnaJ-related (.1.2) Potri.001G009800 [exp] 44 / 3e-05 AT2G34860 201 / 6e-66 embryo sac development arrest 3, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016713 pacid=23149167 polypeptide=Lus10016713 locus=Lus10016713.g ID=Lus10016713.BGIv1.0 annot-version=v1.0 ATGGTTTCTTTGGCCCGGGCTCTCGCGGCTTCCTACTCAATCAAACCTGCAGCGCCTCCCTGCATCGGATGGAATGGCGGCGGGAGGCTCATGATTGTTG GGTGGGAAAGTAAATTCAGACGGAAATGGCGATCTATGGCGGCTGAGTCAGATAATTGGCCTCTACTACCTTCATCGGTTGATGATAAAACCGCTACAGC TGCTGGGTTTTGCATCATAGAAGGGCCAGAAACGGTAGAGGACTTTGCGAAGATGGAATTGGAAGAGATCCAGGACAACATTCGGAGCCGCCGGAACAAA ATCTTCCTTCATATGGAAGAGCTTCGAAGACTGAGGATACAAGAGAGGTTAAAGAAGAAGAGTGCTGCTGAAATTGGAATCGAAGAGGAGGAGGAGGAGA ATGACCTCCCGGATTTCCCATCTTTCATCCCCTTCTTGCCTCCTCTGAGTGCCGCCAACCTTAAGGTGTATTACGCCACTTGCTTCTCTCTTATCTCTGG GATCATCATCTTTGGTGGCCTCTTAGCCCCCACTCTTGAGCTTAAGCTAGGATTAGGAGGCACTAGTTATGCTGATTTTATACGTAGTATGCATCTCCCC ATGCAGTTGAGTGAGGTTGATCCAATTGTGGCATCTTTTTCGGGTGGGGCAGTTGGAGTAATATCGGCGTTGATGGTGGTTGAAGTCAACAACGTTAAGC AACAAGAGCATAAGAGATGCAAATATTGTCTTGGAACTGGGTATCTTGCTTGTGCTCGATGTGCAAACACCGGAGCAATTGTGCTTATTGAACCAGTTTC TACAGTCAATCCTCGAGACGAACCTTTTCCAGCACCCAATACAGAACGATGCCCAAATTGCTCTGGATCTGGCAAGGTGATGTGTCCAACATGCCTTTGC ACCGGTATGGCTATGGCCAGCGAGCACGATCCACGAATCGACCCATTTGATTAG
AA sequence Show only first row Show all	>Lus10016713 pacid=23149167 polypeptide=Lus10016713 locus=Lus10016713.g ID=Lus10016713.BGIv1.0 annot-version=v1.0 MVSLARALAASYSIKPAAPPCIGWNGGGRLMIVGWESKFRRKWRSMAAESDNWPLLPSSVDDKTATAAGFCIIEGPETVEDFAKMELEEIQDNIRSRRNK IFLHMEELRRLRIQERLKKKSAAEIGIEEEEEENDLPDFPSFIPFLPPLSAANLKVYYATCFSLISGIIIFGGLLAPTLELKLGLGGTSYADFIRSMHLP MQLSEVDPIVASFSGGAVGVISALMVVEVNNVKQQEHKRCKYCLGTGYLACARCANTGAIVLIEPVSTVNPRDEPFPAPNTERCPNCSGSGKVMCPTCLC TGMAMASEHDPRIDPFD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61670			unknown protein		Lus10016713 [exp]	0	1
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10001296 [exp]	1.4	0.9462
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10012702 [exp]	2.0	0.9362
AT3G27110			Peptidase family M48 family pr...		Lus10032044 [exp]	3.0	0.9002
AT1G50440			RING/FYVE/PHD zinc finger supe...		Lus10034832 [exp]	3.5	0.8852
AT3G26890			unknown protein		Lus10035170 [exp]	3.7	0.8808
AT3G45620			Transducin/WD40 repeat-like su...		Lus10034751 [exp]	3.9	0.8825
AT5G01450			RING/U-box superfamily protein...		Lus10002487 [exp]	4.2	0.8814
AT1G55000			peptidoglycan-binding LysM dom...		Lus10004477 [exp]	4.7	0.8701
AT1G13990			unknown protein		Lus10037142 [exp]	5.7	0.8790
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Lus10002872 [exp]	6.0	0.8448

Compare expression of checked genes

Lus10016713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.