Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51290 635 / 0 Diacylglycerol kinase family protein (.1) AT4G21540 114 / 1e-26 SPHK1 sphingosine kinase 1 (.1.2.3) AT5G23450 92 / 5e-19 ATLCBK1 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) AT4G21534 68 / 9e-12 SPHK2 sphingosine kinase 2, Diacylglycerol kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011246 [exp] 86 / 3e-17 AT4G21540 588 / 0.0 sphingosine kinase 1 (.1.2.3) Lus10018439 [exp] 77 / 2e-14 AT4G21540 578 / 0.0 sphingosine kinase 1 (.1.2.3) Lus10010161 [exp] 59 / 1e-08 AT5G23450 993 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Lus10017366 [exp] 58 / 2e-08 AT5G23450 1076 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G233300 [exp] 733 / 0 AT5G51290 726 / 0.0 Diacylglycerol kinase family protein (.1) Potri.011G043500 [exp] 78 / 5e-15 AT4G21540 651 / 0.0 sphingosine kinase 1 (.1.2.3) Potri.008G002100 [exp] 61 / 2e-09 AT5G23450 995 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Potri.010G255600 [exp] 61 / 3e-09 AT5G23450 1011 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF00781 [flax] [poplar] DAGK_cat Diacylglycerol kinase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10016714 pacid=23149106 polypeptide=Lus10016714 locus=Lus10016714.g ID=Lus10016714.BGIv1.0 annot-version=v1.0 ATGGAGAAGGAGGACTCGCGTGTGGTTGAGATTATAAACGCCGATGTCCGGAACAGTGCTACCCCGACCGATGCGTCTCCGTCTGTTCATAGTGAGTCTG ACGGCGAGGCAGCGCTGCTTTCGGGCTTGACCTCAACAATTTTCATGGATAATGTTGGCCAAGTGGTTCTCACGCTCGATTCTGATGGACTGTCTTGGAA ATTTCTCGACTCTTGCTATAATGATGTATCATCTTGCCTTGGGATCAGATTTGGTCCTGAAGTCGCCACTGAGATCAAGTTCACTCAAATCTATGCTGTG GAGCTCATCGACTATGGTTCAATTCGTGGATCTAATCTTCCTAACGTAAAGAAATTCTTATCATGCCATGGGAATAGCTCCCAGATGTATCGGTTTACAG TGCATACTGCTATGAACTGCCAAAATCAAACTTCTCTGGCTAGTTTCACATTCGGTCATAGGGATTCACAGATCTGTAGTAGCTGGACGGACCGAATACA TGCTTCTCTGAAATTGGATCCTGAGAGACCAAAGAATCTTCTGGTTTTCGTTAATCCAAGGAGTGGGAAAAAACACGGCCGTAGAACATGGGAGGATGTG GCTCCAATATTTTCACGTGCTAAAGTTGCTACAAAGGTGATTGTTACGGAAAGAGCTGGACAGGCATTTGATGTCATGATTTCTTCATCAAACGAGGAGC TATGTTCATATGATGGTGTCATAATTGTTGGTGGTGATGGCTTCTTCAATGAAGTTCTTAATGGGTTTCTCCTTTTTCGGCTTAAAGCTCCTTATCCACC ATCTCCTTCAGATATTGTTCTCTTCGATGGGAGTAAAGGTCATGGGTTAGCTAGTGATAAACGTGAGGCTACTACTGGAGCTCCTGAACCTGAAGATGAT TGTCCCCTTCTTCCGCATTCAAGTTATAAAATTATGACAAAATCCAGTACTGAGAATACACCATGCTACCCAGATCAAGGTTTCCAGCTTCTGTTCCCAC GTGAGGACTTCAGATTTGGAATTATTCCGGCTGGTTCTACAGATGCCACTGTGATGTGCACCACTGGAACACGAGATCCTATAACATCTGCGTTGCAAAT TGTCATGGGTAAAAGGATCTCTCTTGATATAGCTCAAGTAGTGAGGTGGAAAACATCATTTAATGCGGAAGTTGACCCTTGTGTACGCTATGCAGCCTCT TTTGCTGGGTATGGTTTTTATGGAGATGTCATAACTGAGAGTGAAAAATATCGGTGGATGGGCCCCAAACGCTATGATTATGCTGGAACAAAAGTGTTTC TGAGACACAGATCTTATGAGGCAGAAGTAGCATACTTTGAAACAGAATCTGGAAAACCCGAGTCGACAGTTGTGGGGAGAAGTGAAACGTGCAGCTGGAT GAAAGCGATGTGTGGGTCTGATAAACCTGAAAGAGAGGTTTGCCGTATGAACTGTGGTGTATGCAGTAGACAACAAGCAGCACCCTATTCATATAGAGGG GGAAGAGGACGGTGGATGAGGTGCAGCGGAAAGTTTCAAAGTGTTGGTGCTGCTGTAATGTCAAACAGAAATGAAAAAGCACCCGATGGTCTGGTCGCTG AAGCCCACCTCTCAGACGGCTTCCTTCATCTTCTCTTGATTAAGGACTGCCCCCGTCCTCTATATCTATGGCACCTAACTCAACTTGCGAGAAAAGGCGG GGATCCCCTCAGTTTTAGCTTCGTGGAACACCACAAGACCTCTTGTTTCACCTTCAGTTCCATTGGGAAGGAGAGTGTTTGGAACTTGGACGGCGAGCTT TTCCCGGCGCAGCAGCTTTCGACGCAAGTGTTCCGTGGCCTTATCAGCCTGTTTGCATCTGGCCCTGCAGTTTAG
AA sequence Show only first row Show all	>Lus10016714 pacid=23149106 polypeptide=Lus10016714 locus=Lus10016714.g ID=Lus10016714.BGIv1.0 annot-version=v1.0 MEKEDSRVVEIINADVRNSATPTDASPSVHSESDGEAALLSGLTSTIFMDNVGQVVLTLDSDGLSWKFLDSCYNDVSSCLGIRFGPEVATEIKFTQIYAV ELIDYGSIRGSNLPNVKKFLSCHGNSSQMYRFTVHTAMNCQNQTSLASFTFGHRDSQICSSWTDRIHASLKLDPERPKNLLVFVNPRSGKKHGRRTWEDV APIFSRAKVATKVIVTERAGQAFDVMISSSNEELCSYDGVIIVGGDGFFNEVLNGFLLFRLKAPYPPSPSDIVLFDGSKGHGLASDKREATTGAPEPEDD CPLLPHSSYKIMTKSSTENTPCYPDQGFQLLFPREDFRFGIIPAGSTDATVMCTTGTRDPITSALQIVMGKRISLDIAQVVRWKTSFNAEVDPCVRYAAS FAGYGFYGDVITESEKYRWMGPKRYDYAGTKVFLRHRSYEAEVAYFETESGKPESTVVGRSETCSWMKAMCGSDKPEREVCRMNCGVCSRQQAAPYSYRG GRGRWMRCSGKFQSVGAAVMSNRNEKAPDGLVAEAHLSDGFLHLLLIKDCPRPLYLWHLTQLARKGGDPLSFSFVEHHKTSCFTFSSIGKESVWNLDGEL FPAQQLSTQVFRGLISLFASGPAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51290			Diacylglycerol kinase family p...		Lus10016714 [exp]	0	1
AT1G65070			DNA mismatch repair protein Mu...		Lus10025647 [exp]	2.8	0.8843
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10038110 [exp]	3.0	0.8933
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10043323 [exp]	5.8	0.8974
AT5G26670			Pectinacetylesterase family pr...		Lus10000269 [exp]	7.0	0.8847
AT5G04900		NOL	NYC1-like (.1)		Lus10033408 [exp]	7.9	0.8946
AT5G59020			Protein of unknown function (D...		Lus10016455 [exp]	8.4	0.8629
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10029118 [exp]	9.5	0.8868
AT4G32140			EamA-like transporter family (...		Lus10042422 [exp]	10.5	0.8658
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Lus10005365 [exp]	10.6	0.8911
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019476 [exp]	12.8	0.8895

Compare expression of checked genes

Lus10016714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.