Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02390 153 / 2e-38 DAU1 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT1G07620 122 / 6e-29 ATOBGM GTP-binding protein Obg/CgtA (.1) AT3G61380 56 / 9e-08 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT2G45900 56 / 1e-07 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT4G00440 52 / 2e-06 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) AT2G20240 49 / 1e-05 Protein of unknown function (DUF3741) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036009 [exp] 1185 / 0 AT5G02390 196 / 9e-53 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10040814 [exp] 124 / 2e-29 AT5G02390 129 / 4e-31 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10028147 [exp] 73 / 3e-13 AT2G45900 224 / 4e-65 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10042850 [exp] 69 / 1e-11 AT2G45900 316 / 1e-94 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10014776 [exp] 67 / 5e-11 AT4G00440 239 / 3e-67 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10036356 [exp] 66 / 1e-10 AT4G00440 241 / 6e-68 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10018833 [exp] 54 / 4e-07 AT3G61415 457 / 1e-153 SKP1-like 21 (.1.2) Lus10017797 [exp] 46 / 9e-05 AT4G00440 115 / 3e-26 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10002008 [exp] 45 / 0.0003 AT1G63670 100 / 2e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G095500 [exp] 188 / 7e-50 AT5G02390 189 / 9e-50 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.009G030700 [exp] 130 / 4e-31 AT5G02390 99 / 7e-21 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.001G239500 [exp] 128 / 2e-30 AT5G02390 149 / 6e-37 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.002G160000 [exp] 98 / 1e-20 AT4G00440 351 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.014G084600 [exp] 94 / 2e-19 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016715 pacid=23149038 polypeptide=Lus10016715 locus=Lus10016715.g ID=Lus10016715.BGIv1.0 annot-version=v1.0 ATGTGGGGTGTTCTTCATGTTCTAAAGTACCAACGTTGGCGTTACATTAAGAAACGCCTTCCTCAATCTCGCCCCTCTTTTTCTCCACAAAATTCTACTT CTACTACTGGTGGGATTTATGGAGAACCTAGTACGTCTGAAGCAAATCAAACAACGGCAGAAACTCAACCACTACCTCCAAATAATGCTGCTGCTAATTC TACTGCTTCTAGCTCCGGAGTTGATATCGACAAGCCTGCCAAGTCTATCAGAAGCTCCGTAAGATCTAGGTTGAAATCTCTAATCTCTGATGAACTCTAC AGAAAGAAAGGCAGTAACCATCGTCGCACTAACACATGTCCAGTTCCTCAACAACAACAACAACAACAACATAATCCTCGTGATGAACAAGAAACACAAC AATTAACCTTTGACAGGGTAACCTTACCACCCCCTTCTGTACCTCATGTTGATGACAGTGCGAGCGAAAACCATGATGCCTCCTCAAGTTCACATGAACA TGATCAAGAGAACGACTTTAGTAGTAGAAAGGAGCTCTCTGAAGCACCAGATATGGCATTCACGAACAAAGAATTTATGGCCACAATTCTACAAGACCCA CATTCCCATTTTTCTCCTCAATTCACTACCCATAAGAGATACTCCAAGTCTGTTTCGTTTCCTTCCACAATCCTTAAGAAGGAACCACCACAGAAGCAAG AGGGCGTAGGCCAATCCAAGGAAGTAGAAGCATATGATCCAAAGAAGCTGGGAAGTCATCCACTCCTCAACTCTACATCATACAAGCGTTCGCGCTCGTT GTCAACAATTCCACCAGACTACAAATTGGATGGAATCTCCATTTCAACACTAAAGCCATCAGTTGCAGCATCTGTTAATGATACCTCACCCGCCATGGTC AAGAAGGTAAGTAGTGGCCGAAACAAGACTGCCATGAGGCGCCTGAAAGACCTCAAACAGAAGATCAGACATGTTATTACCATGGAGGCCGTTCTTCATA AGATTCCTCGAGGTAGTGGGAGCTCTCCTGTCTCTGACTTTTCCAAGGATAAGAAAATAGAGGGAGGCAATAATGACATTATCACAAGTCCGAGGAAGAG CTATGCCGGAGATTGTTGCAAGTTTGTTTTGGCGAGTAAGACTGAGAACCAAACGCTTAAGAGAACTTCTTCTCTTTGTGAATCGCTTGATAAGTACCGT CAGTTGTATGACACAACTTTCAACAGAGATTCAAAGAAGAATCTAACAGCAGAGGATTCAACAAACATGGACATAAATAATGAGCAGATAGCGGGGGTAA ATGATGACACAACAACCAATTTAGGCAGTGAGAAATTTCCTATGGTTGAGTTAGATGTTGAAGAACCAGATGAAAGAAAAGAAGTCTCTCCATCTTCAAC TAGTGATGATGTGAGTGAAGAGAACAAGCATGATGTCGAAAAACAGAAAAGTCCATTCTCTAATGAGAAATCCAATGAGAAGTTAGTTGATGATGGTATG TTTATTCCTGAAGATACCTTCTTCATACGAGAGGAGGATGCTAACTCTCACCCACCCTTCTCCACATTCAAAGATTCAGAACAAATTCTGAGGAACCTCA TTGCAAACAAGCTTAACTTCCTAGAAGACCATAGAGCGGAATCAATAATTGATGAAATCATAGAAGCGGAAGAAGAGCTTGACAAGAAGCAGGAATTCGA GTCCAAGAACAACACATGTTATGAGGTGATCGAGTTTCAAGTGGATGATTGGAAGGAAAAAGAATATTTTGATTACGTAAAGGGAATCCTGGACATATCT GGATTTAGCCGGAAGGAAGTTTTGGGAGCATGGCATTCGAACGACCAGCCACTAGATCCAGCAGTTTTTTATGATGCTGGTGGAGACAATCACTTGGCAA CGTTCGATCTCATCAATGAAGTTCTAATGGATATTTATGCAAAGTCGCATACTTACAGCCCAAAGCCGCTGTCATCGCTTTCACACATCAAGCCGATGCC AACTGGGTACCATGTTTTGAAGGAGGTTTGGGGGAACGTGAAGTGGAGTTTGAGGGCCATCCCAGATGAGAATGAAGAACATCTGTTAGATTTTTTGGTG GGTAGAGATTTTGAAAAGAGTGATGGGTGGATGAACTTACAGTTTGATTGTGAGTGTGTCGGCCTTGAGTTGGAAGACTGGCTATTTGATGATATTTTGG ATGAGCTTGTTTTTGAGGATGATCCCAGAGGTTTGGTTTTTTTGTAA
AA sequence Show only first row Show all	>Lus10016715 pacid=23149038 polypeptide=Lus10016715 locus=Lus10016715.g ID=Lus10016715.BGIv1.0 annot-version=v1.0 MWGVLHVLKYQRWRYIKKRLPQSRPSFSPQNSTSTTGGIYGEPSTSEANQTTAETQPLPPNNAAANSTASSSGVDIDKPAKSIRSSVRSRLKSLISDELY RKKGSNHRRTNTCPVPQQQQQQQHNPRDEQETQQLTFDRVTLPPPSVPHVDDSASENHDASSSSHEHDQENDFSSRKELSEAPDMAFTNKEFMATILQDP HSHFSPQFTTHKRYSKSVSFPSTILKKEPPQKQEGVGQSKEVEAYDPKKLGSHPLLNSTSYKRSRSLSTIPPDYKLDGISISTLKPSVAASVNDTSPAMV KKVSSGRNKTAMRRLKDLKQKIRHVITMEAVLHKIPRGSGSSPVSDFSKDKKIEGGNNDIITSPRKSYAGDCCKFVLASKTENQTLKRTSSLCESLDKYR QLYDTTFNRDSKKNLTAEDSTNMDINNEQIAGVNDDTTTNLGSEKFPMVELDVEEPDERKEVSPSSTSDDVSEENKHDVEKQKSPFSNEKSNEKLVDDGM FIPEDTFFIREEDANSHPPFSTFKDSEQILRNLIANKLNFLEDHRAESIIDEIIEAEEELDKKQEFESKNNTCYEVIEFQVDDWKEKEYFDYVKGILDIS GFSRKEVLGAWHSNDQPLDPAVFYDAGGDNHLATFDLINEVLMDIYAKSHTYSPKPLSSLSHIKPMPTGYHVLKEVWGNVKWSLRAIPDENEEHLLDFLV GRDFEKSDGWMNLQFDCECVGLELEDWLFDDILDELVFEDDPRGLVFL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10016715 [exp]	0	1
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001010 [exp]	1.4	0.9359
AT5G08560			transducin family protein / WD...		Lus10001412 [exp]	2.2	0.9192
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10028354 [exp]	2.4	0.9244
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10028201 [exp]	2.4	0.9255
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10017749 [exp]	2.8	0.9197
					Lus10017572 [exp]	3.7	0.8788
					Lus10029790 [exp]	4.2	0.8987
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10028397 [exp]	4.9	0.9147
AT4G13450			Adenine nucleotide alpha hydro...		Lus10023716 [exp]	5.3	0.9110
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10036009 [exp]	5.7	0.9067

Compare expression of checked genes

Lus10016715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.