Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73960 1436 / 0 TAF2 TBP-associated factor 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036010 [exp] 2509 / 0 AT1G73960 1466 / 0.0 TBP-associated factor 2 (.1.2) Lus10025001 [exp] 48 / 7e-05 AT4G33090 1385 / 0.0 aminopeptidase M1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G050800 [exp] 1781 / 0 AT1G73960 1552 / 0.0 TBP-associated factor 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01433 [flax] [poplar] Peptidase_M1 Peptidase family M1 domain
Representative CDS sequence Show only first row Show all	>Lus10016716 pacid=23149083 polypeptide=Lus10016716 locus=Lus10016716.g ID=Lus10016716.BGIv1.0 annot-version=v1.0 ATGGCAAAGCCGCGAAAGTCGAGGAACGAAGGCGCCAAGCCCGACGATTCCGGAGCTGTCGTTCGTCATCAGAAGCTCTGCTTGTCCATTGATGTCGACA AGCGCCAAATCTACGGTTACACGGAGTTGGAAATTGTTGTTCCTGATATAGGCTTTGTTGGGCTTTATGCCGAGAATTTGGGACTGGAGAGTGTCTTTGT GGACGGAGAGCCTACTGAGTTCGAATACTATCCACATCAGCAAAATGCAGAAGCTGAGAAGAAGTGGAAGAATTCAGTGTCGGATCCTAGCTCTGCTGCT GATGCTGCTGGCGCCTCCTATTTGGGTGCCTTGGAGAAAGAACGTGTTCCTAATCTACTTATCAACTGTTGCAAAGCTTTTCGGGCTTCAAATGAACCCG AACAAATTATTTCTGATAATGGGTTACAATGCTCCAGCGAAGCCAAGCAACAGAATGTAAAATTGGTCCGTATCAACTACTGGGTCGAGAAAATGGAGAC AGGTATTCATTTTGATGATAATGTGCTGCACACTCATAATCAGATCAGACGAGGCAGGTGCTGGTTTCCCTGTATGGATGAAGGTTTTCAGCGATGCTGT TATGATCTTGAGTTCACAGTTGCGCAGAATCTTGTTGCTGTCAGTGCAGGAAACTTACTGTACACGGTTCTAAGCGAAGATCAACCTCCTCGGAAGACAT ATGTGTACAGATTAGAGGTTCCTGTAATGGCTCACTGGATTTCGCTGGCGGTTGCACCGTTTGAGATCTTTCCTGATCCTGAAATTGGTCTTGTGTCACA CTTGTGCTTGCCGTCTTGTTTGTCCCAACTACGGAACAGTGTTCGATTTTTTCATAATGCGTTCAAATATTATGAAGACTACCTGGACGCAAAGTTCCCC TTTGGATCTTATACACAACTTTTTCTTGCTCCTGAAATGGTGATAACCTCATCAACCTTGGGAGCTGCCATGAGTCTCTTTACTTCACAGCTCCTGTATG ATGAAAAAGTTATCGATCAGACCATAGACACGTGCGTCAAATTATCCTTTTCTCTTGCCAGACAATGGTTTGGTATATATATTGCCCCAGAAGAACCAAG TGATGAGTGGTTGTTGGATGGGCTTGCTGGTTTCCTGACAGATCTGTTCATCAAGAAATTTTTGGGTAATAATGAGGCGAGATACAGACGATACAAGGCA AATTGTGCTGTTTGTAAAGCAGAAGATCCCGCTATAACTCTGAGCTCCGCTGCTTCTTGCAAAGATCTTTATGGGACCCATAACATTGGTATATATGGAA AAATACGATCCTGGAAGTCGGTCACTGTCCTGCAAATGCTGGAAAAGCAAATGGGGCCCGAGTCATTCCGCCGAATTTTGCAGAAAGTTGTTTCTCGGGC TGGCGATGCTGTTCCTGTCAGATCTCTAAGTACAAAGGAGTTTCGACACTTTGCAACCAAGGTAGGAAACCTAGAGCGGCCATTTGTTAAAGAGTTCTTT GCCCGCTGGGTTGGTTCTTGTGGAAGTCCTGTGCTAAGAATTGGATTCTCGTATAACAAAAGAAAAAATATTGTCGAAGTGGCCGTGCTGCGTGAGTGCA CAGTTGTTCAAGAATCAAGTACATCTATGCTCAACATTGATGGTGAAAATCGAGATGCTGATCTTGGCTGGCCCGGAATGATGAGTATAAGGATACATGA ATTTGATGGTATGTATGACCATCCAGTTCTTCCTTTATCAGGCGACACGTGGCAGTTGCTGGAGATACCATGTCATTCAAGGGGCTCTGGAAGGCGCTTT CAAAAACCTAAAAAGGGCTCAAAACCTGAAGGCTCTGACGAAAATGGTGACATTCCCGTGGTAGAGCGTACCAGTTCAGAGTCCCCATTTTCCTGGATTA GGGCTGATCCAGAGATGGAGTATCTTGCTGAAATTCATCTTAATCAACCAGTACAGATGTGGATCAACGAATTGGAGAAAGATGAAGATGTTGTTGCTCA GTCACAAGCAATCACTGCACTGTCATCTTTGCCCCAACTTCCCTTCTCAGTTGTAATTGCCCTGAACAATCTCCTCAGCGATTCCAAGGTCTTCTGGAGA GTTCGGATTGAGGCAGCATTTGCATTAGCAAATAGTGCTTGTGAGGAAACTGATTGGGCTGGTTTCCAACATTTGGTGAAATATTATAAAAGCCGCAGGT TTGACGCTACCATTGGGCTTCCCAAGCCAAATGACTTTCACGATTTTCCGGAGTACTTTGTTCTTCAGGCAATTCCTCATGCAGTTTCGATGGTAAGAAC TGCAGACAAGAAGAGCCCAAGGGAAGCCGTTGAGTTTGTTTTGCAGCTTTTGAAGTATAATGATAATGCTGGAAATCCTTATTCGGATGTTTTCTGGCTT GCTGCACTTGTTCAGTCAGTTGGCGAGCTTGAATTTGGGCAACAGAGTGTGTCCTGTTTATCATCTTTACTCAAGAGCATCGATCGGTTGTTGCAATATG ACAGACTAATGCCGAGCTACAATGGGATATTGACGGTGAGCTGTATCCAAACTCTATCACAGATAGCGATCAAGCTTTCAGAGTCTATTCATCTCGATCT TGTCCTTGAACTTATCAGACCATTTCGTGAAACTGCAAGTATATGGCAAGTAAGAATTGAAGCGAGCAGAGCACTGCTTGCTTTGGAATTTCACTGCAGA GGCATTGATTCGGCTTTATTGCTAGCTAGAAAGTATTTAGAGGAAGAACCATCTTTGAGAGGTCAGACGAAACTCGGTGCCCAGGCACTTAGGTTATGCC ATATACAAGATGGATCTAATTCTAACAATGACGTTAACGCTGCGACGCTAGTTGCTCTGCTTCAACTGCTTGAAGGTCCTATCGGATTCAACAATATACA TCTTCGACATCATGTATTCTGCATTTTACATGTCCTTGCAGGAAGGGACCCGACACTGTATGGAGCCCCCAGAGAGAAAACATTGTGCGTAGGTGATGCT GAAACTTGCAGCGAACAGAAAAATATATTTGCAGCTCTCATGACTCATAATACAGAGAGAGTGCCGTTGGAAGAGATATCAAAACAGCGTGACACCGGTA TCGAAGCAACGTTTGATGGTTCCAAAGTTGCAGATGCATTATTTAACAATGATGAAGAGCATTTAGATTTGTCTGTTCCAGAGAATCCAAAGGAACCAAA TGTAGTTTCCAACAATCAGGAAGAGAAGTTGGAAATGGTTGTTCCGGAAGCATCAAAGGACGTTGATAGTGTCTCTAACAATCATGAGCGTAAGAAGGCA GTTGTTAAGATAAGACTGAGAAGGTCTGCAGCCTCTAGTCGGGCAGATACTGCCGATAATCAGACAGTCGAGTTACAGCACGGTGATCGCCATGAAACTA CCAGTTCCATGTCAGTGGATGCACCGCCGCTAAAGAATTCTGTTGAGGCTGCAAGCATGAGCAACCAGAATCTGGATGAAGTTAACTCATGTATGGACCG TGGATCCAGAATGACTGCTAGCATTGGGAGTGCCGAGATCATGAGGAAGGAACTACAATGCACTGCTGATTCGAGCAAAGTTTCTCTAAACTCTCATCAG CCTGATGATACATGGTCACCTAGTTTTGTTTCAAAGGATAATAATGTGGATGCTGAGGCTCGGAGGTTTGCCAGTCTACAAACCCTCTCGCTTGGAAGAG TTGAAGGAAAAGAGAAGAAGAAAAGGAAGCGGGATGGTGATAAAGATAAAGGGAAAAGAGATGATCCTGAATACTTGGAGCGGAAGCGATTGAAGAAGGA GAAGAAGAAGAAGGAGAAGGAGCTCGCAAAGTGGATGGCTCTGCATAGCGAGTCATCGAAGAAGCTCGAAGAATCAGCAGCCAACCACCCCAATGTGAAA TCAACGAATGTGGAAGGAAGCTCCAAGATGGAGCCCTTACAACTACAAGGAGGGACTTCTGCTCCTCAGTCTGCTCCCAGATTTAAGATCAGAATTAAGA GCAAAACATTTAACAACTCTTAA
AA sequence Show only first row Show all	>Lus10016716 pacid=23149083 polypeptide=Lus10016716 locus=Lus10016716.g ID=Lus10016716.BGIv1.0 annot-version=v1.0 MAKPRKSRNEGAKPDDSGAVVRHQKLCLSIDVDKRQIYGYTELEIVVPDIGFVGLYAENLGLESVFVDGEPTEFEYYPHQQNAEAEKKWKNSVSDPSSAA DAAGASYLGALEKERVPNLLINCCKAFRASNEPEQIISDNGLQCSSEAKQQNVKLVRINYWVEKMETGIHFDDNVLHTHNQIRRGRCWFPCMDEGFQRCC YDLEFTVAQNLVAVSAGNLLYTVLSEDQPPRKTYVYRLEVPVMAHWISLAVAPFEIFPDPEIGLVSHLCLPSCLSQLRNSVRFFHNAFKYYEDYLDAKFP FGSYTQLFLAPEMVITSSTLGAAMSLFTSQLLYDEKVIDQTIDTCVKLSFSLARQWFGIYIAPEEPSDEWLLDGLAGFLTDLFIKKFLGNNEARYRRYKA NCAVCKAEDPAITLSSAASCKDLYGTHNIGIYGKIRSWKSVTVLQMLEKQMGPESFRRILQKVVSRAGDAVPVRSLSTKEFRHFATKVGNLERPFVKEFF ARWVGSCGSPVLRIGFSYNKRKNIVEVAVLRECTVVQESSTSMLNIDGENRDADLGWPGMMSIRIHEFDGMYDHPVLPLSGDTWQLLEIPCHSRGSGRRF QKPKKGSKPEGSDENGDIPVVERTSSESPFSWIRADPEMEYLAEIHLNQPVQMWINELEKDEDVVAQSQAITALSSLPQLPFSVVIALNNLLSDSKVFWR VRIEAAFALANSACEETDWAGFQHLVKYYKSRRFDATIGLPKPNDFHDFPEYFVLQAIPHAVSMVRTADKKSPREAVEFVLQLLKYNDNAGNPYSDVFWL AALVQSVGELEFGQQSVSCLSSLLKSIDRLLQYDRLMPSYNGILTVSCIQTLSQIAIKLSESIHLDLVLELIRPFRETASIWQVRIEASRALLALEFHCR GIDSALLLARKYLEEEPSLRGQTKLGAQALRLCHIQDGSNSNNDVNAATLVALLQLLEGPIGFNNIHLRHHVFCILHVLAGRDPTLYGAPREKTLCVGDA ETCSEQKNIFAALMTHNTERVPLEEISKQRDTGIEATFDGSKVADALFNNDEEHLDLSVPENPKEPNVVSNNQEEKLEMVVPEASKDVDSVSNNHERKKA VVKIRLRRSAASSRADTADNQTVELQHGDRHETTSSMSVDAPPLKNSVEAASMSNQNLDEVNSCMDRGSRMTASIGSAEIMRKELQCTADSSKVSLNSHQ PDDTWSPSFVSKDNNVDAEARRFASLQTLSLGRVEGKEKKKRKRDGDKDKGKRDDPEYLERKRLKKEKKKKEKELAKWMALHSESSKKLEESAANHPNVK STNVEGSSKMEPLQLQGGTSAPQSAPRFKIRIKSKTFNNS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10016716 [exp]	0	1
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	1.0	0.9494
AT2G45700			sterile alpha motif (SAM) doma...		Lus10038078 [exp]	2.8	0.9302
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10024895 [exp]	3.0	0.9231
AT3G49410			Transcription factor IIIC, sub...		Lus10042710 [exp]	3.3	0.9178
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10033845 [exp]	3.5	0.9371
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10024311 [exp]	3.7	0.9426
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10002879 [exp]	4.0	0.9256
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10039457 [exp]	4.7	0.8989
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10009083 [exp]	5.0	0.9292
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10030688 [exp]	5.7	0.8920

Compare expression of checked genes

Lus10016716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.