Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23670 860 / 0 ATLCB2, LCB2 long chain base2 (.1.2) AT3G48780 849 / 0 ATSPT1 serine palmitoyltransferase 1 (.1) AT3G48790 523 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G36480 127 / 1e-31 FBR11, EMB2779, ATLCB1 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) AT5G04620 93 / 6e-20 BIO4, ATBIOF biotin 4, biotin F (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036011 [exp] 959 / 0 AT5G23670 877 / 0.0 long chain base2 (.1.2) Lus10013317 [exp] 134 / 6e-34 AT4G36480 774 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Lus10005205 [exp] 123 / 5e-30 AT4G36480 772 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Lus10009024 [exp] 79 / 3e-15 AT5G04620 667 / 0.0 biotin 4, biotin F (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G104500 [exp] 900 / 0 AT5G23670 855 / 0.0 long chain base2 (.1.2) Potri.015G103800 [exp] 839 / 0 AT5G23670 829 / 0.0 long chain base2 (.1.2) Potri.012G043800 [exp] 134 / 4e-34 AT4G36480 738 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Potri.015G034600 [exp] 131 / 8e-33 AT4G36480 728 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Potri.001G126700 [exp] 73 / 1e-13 AT5G04620 607 / 0.0 biotin 4, biotin F (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10016717 pacid=23149118 polypeptide=Lus10016717 locus=Lus10016717.g ID=Lus10016717.BGIv1.0 annot-version=v1.0 ATGATTACGATCCCCTACTTGACCGCTTTGAGCACCTACTTCAGCTACGGCTTGCTCTTCGCTTTCGGTCAATTGCGTGATTTCTTCCGCAAGATCTTTG ATTGGTGGCGCGACAGCAACCTTGAGGGCTACGCACCGATCTGTTTAGGACTTGAAGACTTCTACATTCGACGTTTGTATCTTCGGATTCAGGATTGCTT TGGGCGACCCATATCCAGTGCTCCTGATGCTTGGTTTGATGTCGTCGAACGTTACTCCAATGACAATAACAAGACATTGAAACGAACTACAAAGACAAGC AAGTGCCTCAACTTGGGATCCTACAACTATCTCGGCTTTGCAGCAGCTGATGAATATTGTACTCCACGTGCAATTGAGTCCCTAAAGAAGTTTGCGGCAA GTACCTGCAGCACTCGCGTTGATGGGGGAACTACGATTTTACACACTGAGTTGGAGGAATGTGTTGCCAAGTTTGTTGGAAAGCCTGCTGCCATAGTGAC TGGGATGGGTTATGTGACAAACTCTGCCATCCTCCCTGTCCTGATGGGGAAGGGAGGGCTGATAATTAGTGATTCACTGAACCATAACTCCATTGTCAAT GGTGCTCGAGGATCTGGAGCAACAATCCGTGTGTTCCAACATAACACTCCATCTCATTTGGAGAAAGTTCTGAGAGAACAGATTGCTGAGGGGCAGCCCA GGACACGCAGACCTTGGAAGAAGATAATGGTCATTGTTGAAGGTATTTATAGCATGGAAGGAGAACTCTGCAAACTTCCGGAGATTGTTGCTATTTGCAA GAATTATAAGGCTTATGTATATCTGGATGAGGCTCATAGCATTGGAGCTGTTGGGAAATCTGGACGAGGTGTCTGTGAACTGTTAGGAGTGGATACTGCT GATGTAGATGTTATGATGGGAACTTTTACAAAATCATTTGGATCTTGCGGTGGTTATATTGCTGGATCCAAGGAACTTGTACAATATCTTAAATACAACT GTCCAGCTCATCTATACGGAACATCGATCTCACCTCCAGCGGCGCAGCAAATTATCTCTTCCATAAAGGTTATTCTTGGAGAAGATGGTTCAAACAGAGG TACTAATGGCGATGGTCTTCCCTCCCCATCATTGCTGGCTTTCCAATACAGGGCTCAAAAGCTTGTGAAAATTCGTGAAAATAGCAACTTCTTCAGGTCA GAACTGCAGAAGATGGGTTTCGAGGTTCTTGGGGATAACGATTCGCCTGTAATGCCAATAATGCTATACAATCCAGCAAAAATCCCAGCATTTTCCCGCG AGTGTCTAAGGCAGAACGTTGCTGTGGTGACAGTTGCTTTTCCAGCAACCCCTCTGCTATTGGCCAGGGCACGTATATGCATATCCGCTGCTCATACTAG GGAAGATCTTGTTAAGGCCTTGGAGGTTATTAGTCAAGTGGGTGACCTTGTGGGTATCAAGTACTTCCCCGCTGAACCCAACAAGCAACACCAGGAGCAT GGCGCAATCAAGTTGGAGTGA
AA sequence Show only first row Show all	>Lus10016717 pacid=23149118 polypeptide=Lus10016717 locus=Lus10016717.g ID=Lus10016717.BGIv1.0 annot-version=v1.0 MITIPYLTALSTYFSYGLLFAFGQLRDFFRKIFDWWRDSNLEGYAPICLGLEDFYIRRLYLRIQDCFGRPISSAPDAWFDVVERYSNDNNKTLKRTTKTS KCLNLGSYNYLGFAAADEYCTPRAIESLKKFAASTCSTRVDGGTTILHTELEECVAKFVGKPAAIVTGMGYVTNSAILPVLMGKGGLIISDSLNHNSIVN GARGSGATIRVFQHNTPSHLEKVLREQIAEGQPRTRRPWKKIMVIVEGIYSMEGELCKLPEIVAICKNYKAYVYLDEAHSIGAVGKSGRGVCELLGVDTA DVDVMMGTFTKSFGSCGGYIAGSKELVQYLKYNCPAHLYGTSISPPAAQQIISSIKVILGEDGSNRGTNGDGLPSPSLLAFQYRAQKLVKIRENSNFFRS ELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNVAVVTVAFPATPLLLARARICISAAHTREDLVKALEVISQVGDLVGIKYFPAEPNKQHQEH GAIKLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Lus10016717 [exp]	0	1
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10000900 [exp]	2.8	0.8917
AT3G62220			Protein kinase superfamily pro...		Lus10009983 [exp]	4.8	0.8982
AT1G78850			D-mannose binding lectin prote...		Lus10000579 [exp]	8.8	0.8592
AT3G60800			DHHC-type zinc finger family p...		Lus10032199 [exp]	9.5	0.8230
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Lus10036011 [exp]	13.0	0.8575
AT5G01970			unknown protein		Lus10031947 [exp]	13.4	0.8517
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006879 [exp]	14.2	0.8864
AT3G02740			Eukaryotic aspartyl protease f...		Lus10036430 [exp]	15.9	0.8365
AT2G39650			Protein of unknown function (D...		Lus10002695 [exp]	17.3	0.8497
AT3G48860			unknown protein		Lus10036015 [exp]	20.4	0.8759

Compare expression of checked genes

Lus10016717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.