Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48800 120 / 1e-31 Sterile alpha motif (SAM) domain-containing protein (.1) AT5G23680 114 / 4e-29 Sterile alpha motif (SAM) domain-containing protein (.1) AT2G45700 47 / 1e-05 sterile alpha motif (SAM) domain-containing protein (.1) AT3G07170 46 / 1e-05 Sterile alpha motif (SAM) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036012 [exp] 466 / 6e-166 AT5G23680 171 / 4e-51 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10021086 [exp] 52 / 2e-07 AT3G11890 100 / 2e-23 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10017225 [exp] 52 / 3e-07 AT3G11890 101 / 9e-24 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10038078 [exp] 47 / 2e-05 AT2G45700 767 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Lus10014516 [exp] 45 / 5e-05 AT1G70180 80 / 1e-16 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G104700 [exp] 197 / 2e-60 AT3G48800 166 / 2e-49 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.015G104000 [exp] 124 / 6e-33 AT3G48800 115 / 5e-30 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.003G164600 [exp] 114 / 4e-29 AT3G48800 133 / 5e-37 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.001G062800 [exp] 113 / 2e-28 AT3G48800 136 / 8e-38 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.006G218300 [exp] 52 / 2e-07 AT2G45700 732 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Potri.006G198500 [exp] 44 / 7e-05 AT3G11890 108 / 6e-27 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Potri.014G190800 [exp] 42 / 0.0003 AT3G07170 218 / 1e-72 Sterile alpha motif (SAM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0003 [flax] [poplar] SAM PF07647 [flax] [poplar] SAM_2 SAM domain (Sterile alpha motif)
Representative CDS sequence Show only first row Show all	>Lus10016718 pacid=23149035 polypeptide=Lus10016718 locus=Lus10016718.g ID=Lus10016718.BGIv1.0 annot-version=v1.0 ATGGCAGATATGCAACCGCCGGAACTCCATCTTGTGGGCGGCGTGGTGGCTTCCGTTATCCCTCCTCCTACTGCTGCTGCTGGGGTTTCTAACCAAGTGA CCTCGTCGGAAACCGTGGGGTCGAAGCGGCAAAGGAGGCCCAGTGTCCGGCTTGGCGATATCGGCGGCGATAGTCTCTACGATCCCTATTCCCGGAAGTC TATTGGTGGAACGAGTGGTAGTAGCAAGCAATGGAAACAGCAAGTAGTGGATCAGAAGCATAAAGATTCTTCAAGCAAGGCTGCTGCCGCGTTCAAGACT AGGGCTCTCACGGACTATACTACTGAAACCCTAGACGAGAGCAGCAAAGAATTGAATCTGGAAAAAATCACAATTGGGAGCTGGAGAGTCAAAGATACCA AGAAGCGAGCCCCAATTCCCACCGCCAAGCGCGTTAGATCCAGTTGGGTGACCAAGATTGAAGAAGAAGAAGGTGGTGGTAACAACAATGTTGAAGGGGA TTTCGACAGCGGAGAAGACATGGACGATGATGATGGTGATGGGAATTCAGAAGATACTCCTTCCAAAGAAGATAGTCATGAGAATTTGGGGGACGGGAAT GAGAGAAACGAGAGGGAAATTTACTACAACAACAACAACCACAAGAAGAGGAGTAGTGTTAAGTCAAGAAGCGGTGAACATCATCATAATATGTCCAACC ATCATCATCATCAAGATGGAGTTGAATTGTTGTCAGTCCCTTCTGAAACGGACACTAGAGGAGGAGGAAGCGGGTACAGGGAGAATAATAATGAGATAAT GTGTGGTGCAGGAGAAGATGGTGTGAGGATTTGGCTAGATAACTTGGGGTTAGGACGTTATGCTCCTGTATTTGAAATACATGAGGTGGATGATGAAGTG TTGCCTATGTTGACGTTGGAAGATTTGAAAGATATGGGGATTAATGCAGTTGGCTCCAGAAGGAAGATGTTTGCTGCAATTCAGAAGCTCAATAAAGGGT TTTCTTGA
AA sequence Show only first row Show all	>Lus10016718 pacid=23149035 polypeptide=Lus10016718 locus=Lus10016718.g ID=Lus10016718.BGIv1.0 annot-version=v1.0 MADMQPPELHLVGGVVASVIPPPTAAAGVSNQVTSSETVGSKRQRRPSVRLGDIGGDSLYDPYSRKSIGGTSGSSKQWKQQVVDQKHKDSSSKAAAAFKT RALTDYTTETLDESSKELNLEKITIGSWRVKDTKKRAPIPTAKRVRSSWVTKIEEEEGGGNNNVEGDFDSGEDMDDDDGDGNSEDTPSKEDSHENLGDGN ERNEREIYYNNNNHKKRSSVKSRSGEHHHNMSNHHHHQDGVELLSVPSETDTRGGGSGYRENNNEIMCGAGEDGVRIWLDNLGLGRYAPVFEIHEVDDEV LPMLTLEDLKDMGINAVGSRRKMFAAIQKLNKGFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23680			Sterile alpha motif (SAM) doma...		Lus10016718 [exp]	0	1
AT5G35732			unknown protein		Lus10006404 [exp]	9.2	0.8038
AT3G58800			unknown protein		Lus10007354 [exp]	9.2	0.7981
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Lus10000013 [exp]	10.7	0.7792
AT1G79010			Alpha-helical ferredoxin (.1)		Lus10023571 [exp]	12.4	0.7762
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10008156 [exp]	12.4	0.7661
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10015668 [exp]	14.5	0.7949
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10003698 [exp]	18.9	0.7846
AT3G58840		PMD1	peroxisomal and mitochondrial ...		Lus10010937 [exp]	21.7	0.7745
AT4G25670			unknown protein		Lus10038842 [exp]	23.5	0.7689
AT1G79390			unknown protein		Lus10001838 [exp]	27.2	0.7549

Compare expression of checked genes

Lus10016718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.