Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23690 555 / 0 Polynucleotide adenylyltransferase family protein (.1) AT3G48830 505 / 3e-170 polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein (.1) AT1G28090 445 / 7e-152 Polynucleotide adenylyltransferase family protein (.1.2.3) AT2G17580 266 / 8e-80 Polynucleotide adenylyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036013 [exp] 951 / 0 AT5G23690 649 / 0.0 Polynucleotide adenylyltransferase family protein (.1) Lus10016699 [exp] 280 / 2e-85 AT2G17580 453 / 1e-149 Polynucleotide adenylyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G105000 [exp] 640 / 0 AT5G23690 663 / 0.0 Polynucleotide adenylyltransferase family protein (.1) Potri.015G104300 [exp] 624 / 0 AT5G23690 637 / 0.0 Polynucleotide adenylyltransferase family protein (.1) Potri.003G164400 [exp] 533 / 0 AT1G28090 569 / 0.0 Polynucleotide adenylyltransferase family protein (.1.2.3) Potri.005G100100 [exp] 288 / 3e-87 AT2G17580 459 / 4e-150 Polynucleotide adenylyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF01743 [flax] [poplar] PolyA_pol Poly A polymerase head domain
Representative CDS sequence Show only first row Show all	>Lus10016719 pacid=23149108 polypeptide=Lus10016719 locus=Lus10016719.g ID=Lus10016719.BGIv1.0 annot-version=v1.0 ATGGCGATTTCTGGTTTTGGTTTTGCCTATAGACCTCATTTCCCTTTCCGCCCACAAATGTTCCACTGCGTTCGCAAAGCTAGATATGGTGCTGTTGCGG CTGTTGAGATGCTTGACGAGCGCACCAACTACAGCTCAGGGCGCCAAATGGAAGGAGGGAAAAAGGTCTCAGCTTGGAAGAAGCTCAACTCCAAGGAACT CGGAATTAGCACATCTATGATTTCCAAGCCTACCAGGAAAGTTCTCAATGTTCTCAAGAAAAGAGGATATGAGGTTTATCTTGTTGGTGGCTGTGTTCGT GATCTTATCCTGAAGCGGACACCAAAGGACTTTGACATAATAACTTCAGCACAACTTAAAGAGGTAGTAAGGGCCTTCTCATGGTGCGTCATTGTTGGCC GAAGGTTCCCTATCTGTCATGTTCATATTGATGGCATTATATTGGAAGTTTCAAGTTTTAGTACCAGTGGACCTCAAATTCATGGCCGTCACAACTATGA TTTCTGGAACCCTGCTGATTGCGAGCACCAGGATTTTATACGTTGGAGAAATTGCATGCGACGTGATTTCACAATCAACGGGTTGATGTTTGATCCATAT GCGAGAATTGTGTATGATTACACGGGAGGTCTGGAAGATATTCGAAAGGCTAAAGTGCGGACTGTGATTCCTGCAAGTAATTCTTTTCAGGAAGATTGTG GTGAGTTTTTGTTTCAATTTTCCACTTTTAGTTCCTTCCGTGGTAATCAGGCACAGCAACTACTGCATTATGGACTAAGTCACAGTCTTTGGCAATGTCT CCAAATTGTCTTTGCAGCTCGGATTCTGCGAGCAGTCAGGATTGCTGCTCGCCTAGGATTTCGTTTCTCTCAGGATACAGCTCATTTTATTAAAAATTTA TCGGGGTCAATTTTAAGGCTTGATAAGACAAGGATTATGATGGAAATGAATTACATGCTAGCATATGGTTCTGCTGAAGCTTCTTTGCGGCTTTTATGGA AATTTGGACTTCTTGAACTTCTTCTGCCAATTCAGGCGGCATACTTTGTTCAAAATGGTTTTAAGAGACGTGATACGAGATCTAATATGCTGTTGTCCTT GTTTTCCAACTTGGATAAACTCCTTGCACCTGACAAACCATGCCATAGTAGTTTGTGGGTTGGAATATTAGCCTTTCACAAGGCTATGTCGGAGCAACCG AGGAATCCAATGATAGTTACTACCTTTTGTCTTGCTGTTCACAATGGGGGAGATGTGTCAAAAGCAGTGAAGATAGCAAAGAGTATCGGCAAGCAACATG ATAAAAGCTATCATGAACTATCAGAAGAAGCTGTTGGTCTGGATTCGAGGGTATTGATTAACGAGGTTAAGGATCTTGCAGCATGTGTTGAACAGGAGCT ATCTCTTATGACTGACGAGTATTATGTATCAAAGGCCATGGCGAAGTATCCTAAAGCTCCGTACTCGGATCTGGTGTTCATTCCACTGCAATTGTATCTA AGTGCGAGGAAGATGTTTGAGTGTGTAAGAGGAGGGGTAGAAAGAGGATATTCGGGGAAACAAGGTAAGAGGAGGAGAAGGATAAATCACGAATTACTAA CCGCAGGAAACTTGGAAGAAGTTAGGCATACATTTGCAAGAGTTGTGTTTGATACCCTTTACCCTCTCGACCAATCTAACTGA
AA sequence Show only first row Show all	>Lus10016719 pacid=23149108 polypeptide=Lus10016719 locus=Lus10016719.g ID=Lus10016719.BGIv1.0 annot-version=v1.0 MAISGFGFAYRPHFPFRPQMFHCVRKARYGAVAAVEMLDERTNYSSGRQMEGGKKVSAWKKLNSKELGISTSMISKPTRKVLNVLKKRGYEVYLVGGCVR DLILKRTPKDFDIITSAQLKEVVRAFSWCVIVGRRFPICHVHIDGIILEVSSFSTSGPQIHGRHNYDFWNPADCEHQDFIRWRNCMRRDFTINGLMFDPY ARIVYDYTGGLEDIRKAKVRTVIPASNSFQEDCGEFLFQFSTFSSFRGNQAQQLLHYGLSHSLWQCLQIVFAARILRAVRIAARLGFRFSQDTAHFIKNL SGSILRLDKTRIMMEMNYMLAYGSAEASLRLLWKFGLLELLLPIQAAYFVQNGFKRRDTRSNMLLSLFSNLDKLLAPDKPCHSSLWVGILAFHKAMSEQP RNPMIVTTFCLAVHNGGDVSKAVKIAKSIGKQHDKSYHELSEEAVGLDSRVLINEVKDLAACVEQELSLMTDEYYVSKAMAKYPKAPYSDLVFIPLQLYL SARKMFECVRGGVERGYSGKQGKRRRRINHELLTAGNLEEVRHTFARVVFDTLYPLDQSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23690			Polynucleotide adenylyltransfe...		Lus10016719 [exp]	0	1
AT5G23690			Polynucleotide adenylyltransfe...		Lus10036013 [exp]	1.0	0.9573
AT3G21300			RNA methyltransferase family p...		Lus10000172 [exp]	2.0	0.9228
AT3G21300			RNA methyltransferase family p...		Lus10009743 [exp]	5.5	0.9065
AT1G30680			toprim domain-containing prote...		Lus10038433 [exp]	6.6	0.8807
AT1G14270			CAAX amino terminal protease f...		Lus10036748 [exp]	7.5	0.9021
AT5G26880		AGL26	AGAMOUS-like 26 (.1.2)		Lus10015701 [exp]	8.1	0.8947
AT4G12970		EPFL9, STOMAGEN	stomagen (.1)		Lus10009589 [exp]	8.1	0.8891
AT5G38360			alpha/beta-Hydrolases superfam...		Lus10009166 [exp]	8.3	0.9217
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026990 [exp]	9.8	0.9020
AT1G73530			RNA-binding (RRM/RBD/RNP motif...		Lus10042293 [exp]	11.5	0.8903

Compare expression of checked genes

Lus10016719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.