Plant FIBer expression Database

Lus10016721 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G48860 560 / 0 unknown protein
AT5G23700 498 / 2e-171 unknown protein
AT5G13260 436 / 1e-147 unknown protein
AT4G25070 424 / 3e-140 unknown protein
AT4G08630 309 / 2e-95 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036015
[exp]
878 / 0 AT3G48860 675 / 0.0 unknown protein
Lus10043194
[exp]
749 / 0 AT3G48860 684 / 0.0 unknown protein
Lus10032546
[exp]
695 / 0 AT3G48860 595 / 0.0 unknown protein
Lus10001801
[exp]
474 / 2e-162 AT5G13260 591 / 0.0 unknown protein
Lus10002574
[exp]
456 / 6e-155 AT5G13260 566 / 0.0 unknown protein
Lus10001720
[exp]
305 / 1e-94 AT4G08630 471 / 5e-155 unknown protein
Lus10004138
[exp]
284 / 1e-86 AT4G08630 464 / 2e-152 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G105400
[exp]
641 / 0 AT3G48860 546 / 0.0 unknown protein
Potri.015G104600
[exp]
588 / 0 AT3G48860 452 / 3e-153 unknown protein
Potri.003G164100
[exp]
520 / 2e-180 AT5G13260 529 / 0.0 unknown protein
Potri.001G065800
[exp]
518 / 1e-179 AT3G48860 528 / 0.0 unknown protein
Potri.005G044600
[exp]
400 / 7e-132 AT4G08630 436 / 5e-142 unknown protein
PFAM info
Representative CDS sequence
>Lus10016721 pacid=23149142 polypeptide=Lus10016721 locus=Lus10016721.g ID=Lus10016721.BGIv1.0 annot-version=v1.0
ATGGATCGGAGGAGGGCCGGAAGTCCGGTCTACGGGCGGCAGTGGAGTGGAGGATCGAGCAGCACGGGGTCTTCGTCTCCGGCGATGTCACCGGCGCATC
CCAGCTCTAGGCTCGGAGGAGGCATGTCTACCATCAAGCGCACACAAAACGTAGCCGCCAAGGCAGCTGCTCAGCGGCTTGCTCAAGTCATGGCCTCGCA
GACTGCCGACGATGACGACGATGATGACGATCTAGGGTTTAGATTCAGTAATCAGTCAGCTCCTCCTCCTCCTTCCTCCAACTTAGGTAACGGTTTTAGT
CACATCAGCAAGAACAATGCTACTGCGGCCATTTCTTTTACTAGAGGGAACAGATCTCCATCCCCTGCGTTAGGTCGAAACTTTGTAGAGCAAGTTCCTC
AGCCTCGGTCTTCATCGACAGGACGATCCACTATGTCTGCGCGAACTTCATTGATGCCGTCTAGTAAGTCAACTGTAAGGACTCCCATTCCTATACCTGC
CATTGATCCTCCCACCGGCAAGATCCGAGATAAAAGGTTTAGTTCAGATGTGGGGCAACCTAAGAAAGACAGTGGAGATCAGCGTGAAGCATCTGCACTT
CGTGATGAACTTGATATGCTACAAGAGGAAAATGAGGTCATAGTTGACAAGCTTCGTCGTGCAGAAGAAACACGGCAGGAAGCTGAGGCTCGTGCGCAGG
AACTTGAGAAACAGGTAGCTGCTCTTGGTGAAGGTGTTTCCCTTGAAGCTAAACTCTTAAGCAGGAAAGAAGCAGTCCTGCGTCAAAGAGAGGCCGCACT
AAAGGCGGCACAGCAAACCAAAGATGGTAGAGAGGAAGAAATTGCAGCGTTGCGCTCAGAACTTGAGAATATTAAGGATGAGGCGGCAACAGCTGTGGAG
CAGCTACAAGAAGCAGAATCTGAAGCTAAATCACTCCGCACTATGACTCAGAGAATGATTTTGACTCAAGAAGAAATGGAGGAAGTAGTTCTGAAGAGAT
GTTGGCTTGCTCGATACTGGGGTTTGGCTGTGCAACACGGCATTTGTGCAGATATAGCAGCATCAAAGCATGAACATTGGTCCGCTTTAGCTCCCCTGCC
ATTTGAGGTTGTCATTTCTGCTGGACAGAAGGCAAAGGAAGAAGCTAGAGTTGGCAGTAATTCAGATAGGAGTATATCTGCTCGCGATTTGAGTGATTTA
ACAGGAGAAGGAAATATTGAGAGTATGCTTTCGGTTGAAATGGGACTGAGGGAATTGGCTTCTTTAAAGGTTGAGGATGCTGTTGTCCTTGCATTGGGAC
ATCGCAGAAGAGCTAATCTAAAATCCCTTGGTGAGCCCAAGTACTCTGAAGTCATTGAACTGAGTGAAGGCGAGGCAGAAGATGTTCTTTTCAAGGAGGC
ATGGCTAACATATTACTGGAGAAGAGCGAAAGGACATGGCGTGGAAGAGGACATTGCGGAAGGGCGTCTTCTGAATTGGATCAGTCGCAGTGGAAAGGCA
CCAACCTCGCACGATGCTGTGGACGTTGAGAGAGGGTTGGTGGAGCTAAGGAAGTTGAGCATAGAGCAACAACTTTGGGAAGCATCGCGAAAAGAAACCG
ATCTACAACCTTCACAGCTTGCTGCTGTTGCTACTAATCACAAATCTCCCACAGAATCCGACCTCTCTTCGTAA
AA sequence
>Lus10016721 pacid=23149142 polypeptide=Lus10016721 locus=Lus10016721.g ID=Lus10016721.BGIv1.0 annot-version=v1.0
MDRRRAGSPVYGRQWSGGSSSTGSSSPAMSPAHPSSRLGGGMSTIKRTQNVAAKAAAQRLAQVMASQTADDDDDDDDLGFRFSNQSAPPPPSSNLGNGFS
HISKNNATAAISFTRGNRSPSPALGRNFVEQVPQPRSSSTGRSTMSARTSLMPSSKSTVRTPIPIPAIDPPTGKIRDKRFSSDVGQPKKDSGDQREASAL
RDELDMLQEENEVIVDKLRRAEETRQEAEARAQELEKQVAALGEGVSLEAKLLSRKEAVLRQREAALKAAQQTKDGREEEIAALRSELENIKDEAATAVE
QLQEAESEAKSLRTMTQRMILTQEEMEEVVLKRCWLARYWGLAVQHGICADIAASKHEHWSALAPLPFEVVISAGQKAKEEARVGSNSDRSISARDLSDL
TGEGNIESMLSVEMGLRELASLKVEDAVVLALGHRRRANLKSLGEPKYSEVIELSEGEAEDVLFKEAWLTYYWRRAKGHGVEEDIAEGRLLNWISRSGKA
PTSHDAVDVERGLVELRKLSIEQQLWEASRKETDLQPSQLAAVATNHKSPTESDLSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G48860 unknown protein Lus10016721
[exp]
0 1
AT5G26240 ATCLC-D, CLC-D chloride channel D (.1) Lus10010531
[exp]
1.0 0.9204
AT4G19110 Protein kinase superfamily pro... Lus10033278
[exp]
4.1 0.8792
AT4G21380 ARK3 receptor kinase 3 (.1) Lus10019061
[exp]
5.2 0.8893
AT3G12250 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (... Lus10026166
[exp]
8.8 0.9109
AT4G30360 ATCNGC17 cyclic nucleotide-gated channe... Lus10019983
[exp]
9.5 0.9051
AT3G10550 MTM1, AtMTM1 Arabidopsis thaliana myotubula... Lus10038641
[exp]
9.6 0.8680
AT4G10570 UBP9 ubiquitin-specific protease 9 ... Lus10033243
[exp]
10.4 0.8771
AT3G51830 ATG5, SAC8 SAC domain-containing protein ... Lus10025267
[exp]
10.5 0.8848
AT4G24620 PGI1 phosphoglucose isomerase 1 (.1... Lus10015959
[exp]
10.6 0.8370
AT5G61500 ATATG3 autophagy 3 (APG3) (.1) Lus10009026
[exp]
18.3 0.8902

Lus10016721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.