Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28110 670 / 0 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT2G33530 643 / 0 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G43780 416 / 7e-142 SCPL44 serine carboxypeptidase-like 44 (.1) AT5G42230 395 / 4e-134 SCPL41 serine carboxypeptidase-like 41 (.1) AT5G42240 389 / 2e-131 SCPL42 serine carboxypeptidase-like 42 (.1) AT2G12480 360 / 9e-121 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT4G30610 332 / 1e-109 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 327 / 1e-107 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT3G02110 326 / 4e-107 SCPL25 serine carboxypeptidase-like 25 (.1) AT2G24010 324 / 8e-107 SCPL23 serine carboxypeptidase-like 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036016 [exp] 893 / 0 AT1G28110 690 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10042287 [exp] 538 / 0 AT1G28110 598 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10010331 [exp] 490 / 4e-171 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10021856 [exp] 486 / 9e-170 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040324 [exp] 485 / 3e-169 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10013395 [exp] 483 / 1e-168 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10023446 [exp] 474 / 6e-165 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10030317 [exp] 450 / 2e-155 AT1G28110 501 / 2e-175 serine carboxypeptidase-like 45 (.1.2) Lus10003302 [exp] 447 / 4e-154 AT1G28110 498 / 2e-174 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G105500 [exp] 733 / 0 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 697 / 0 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 681 / 0 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.003G164000 [exp] 662 / 0 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036500 [exp] 575 / 0 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 540 / 0 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.016G034600 [exp] 510 / 5e-179 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034400 [exp] 508 / 3e-178 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036000 [exp] 502 / 6e-176 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.002G071800 [exp] 393 / 4e-133 AT5G42240 742 / 0.0 serine carboxypeptidase-like 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10016722 pacid=23149145 polypeptide=Lus10016722 locus=Lus10016722.g ID=Lus10016722.BGIv1.0 annot-version=v1.0 ATGGCAATGCCATTGACGCAGCAGATGATGAGTTTGGTTTTGGGTTGTCTGTGGTTTCAGCTCTGCATTTCCATGGTGATGGTAGAGTCTCTTCTTCCTC CTCCTCCCCATCCTGATGAGATATCCAGCCTTCCTGGGCAACCACCCCAAGTGAGGTTTCGCCAATTTTCAGGTTATGTCCCTGTGGATTACAAGAATAA AACTTCTCTTTTCTACTACTTCGTTGAAGCTGAAACAGATCCAGCTTCCAAGCCCTTGGTTCTTTGGCTCAATGGAGGGCCAGGGTGTTCTTCTCTGGGA GTTGGTGCTTTCTCTGAGAATGGACCCTTCAGACCCAACGGCAAGAATTTGGTTAAAAATGGGTTTAGTTGGAATAGAGAAGCAAACATGTTGTATCTGG AAACGCCAGTTGGGGTGGGATTCTCTTACTCCAACGATAACTCTTCCTACGTTTCCGTGGACGATGAATCAACTGCCAGGGGCAATGTTATATTCTTGCA AAGGTGGTTCAATAAGTTCCCTCAGTACAGGCAAAGGGATTTGTTTATAACTGGGGAAAGTTATGCAGGGCATTATATTCCTCAACTTGCGAAACTGATG CTTGAGATCAACAGAAAGGAGCAGATTTTCCATTTGAAGGGAATTGCAATGGGTAATCCTGTGCTTGAATTTGCGACGGATCTGAACTCAAGAGCCGAGT ATTTCTGGTCTCATGGTCTGATATCAGATTCAACGTACAAGCTCTTCACTTCGTCGTGCAACTACTCCAGATATGTGAGTGAATACTATAGGGACTCGGT TTCAGACATATGCGGTGCTGTGATGAATCAAGTTACCACTGAAACCAGTAGGTTTGTGGACAAGTATGATGTTACTCTCGATGTCTGCATTCCATCAATA CTCTCACAATCTAAAATAATAAGTCCCAAGGGAATGTCAGAGCCTGTTGATGTGTGTGTGGAGGATGAAACTGTGAATTACTTGAATCGGAAAGATGTAA AGATAGCTCTCCATGCAAAGCTTGTTGGAGTTGGGGCATGGGCAGTATGCAGCAGCATTCTGGATTATGATGTGCTCAACATAGAGAACCCCACGGTTCC AATCCTGGGATTACTTGTCAAGGCAGGAATTCGAGTATTGGTTTACAGTGGAGATCAAGATTCAGTGATTCCATTAATGGGTAGCCGAACAATTGTCCAT AGACTAGGAAAGCAGCTGGGGCTGAATACAACAGTACCTTACAGAGCGTGGTTTGCAGGGGAACAGGTTGGTGGGTGGAATCAAGTATATGGGGAAATGT TGTCATTTGCAACAATTAGAGGAGCATCCCATGAAGCTCCATTCTCACAGCCAGAGAGATCACTCATGCTATTCAAGTCATTCCTAGAAGGGAAGCCTCT CCCTCAAGTATTCTCTTGA
AA sequence Show only first row Show all	>Lus10016722 pacid=23149145 polypeptide=Lus10016722 locus=Lus10016722.g ID=Lus10016722.BGIv1.0 annot-version=v1.0 MAMPLTQQMMSLVLGCLWFQLCISMVMVESLLPPPPHPDEISSLPGQPPQVRFRQFSGYVPVDYKNKTSLFYYFVEAETDPASKPLVLWLNGGPGCSSLG VGAFSENGPFRPNGKNLVKNGFSWNREANMLYLETPVGVGFSYSNDNSSYVSVDDESTARGNVIFLQRWFNKFPQYRQRDLFITGESYAGHYIPQLAKLM LEINRKEQIFHLKGIAMGNPVLEFATDLNSRAEYFWSHGLISDSTYKLFTSSCNYSRYVSEYYRDSVSDICGAVMNQVTTETSRFVDKYDVTLDVCIPSI LSQSKIISPKGMSEPVDVCVEDETVNYLNRKDVKIALHAKLVGVGAWAVCSSILDYDVLNIENPTVPILGLLVKAGIRVLVYSGDQDSVIPLMGSRTIVH RLGKQLGLNTTVPYRAWFAGEQVGGWNQVYGEMLSFATIRGASHEAPFSQPERSLMLFKSFLEGKPLPQVFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10016722 [exp]	0	1
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10036016 [exp]	2.2	0.8795
AT3G28420			Putative membrane lipoprotein ...		Lus10005837 [exp]	4.5	0.8824
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011426 [exp]	7.1	0.8848
AT5G13250			RING finger protein (.1)		Lus10002575 [exp]	7.9	0.8903
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Lus10022818 [exp]	8.0	0.8564
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10026482 [exp]	8.5	0.8616
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Lus10018020 [exp]	12.2	0.8004
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Lus10011886 [exp]	12.4	0.8535
AT2G21300			ATP binding microtubule motor ...		Lus10035471 [exp]	13.0	0.8863
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10038449 [exp]	13.1	0.8515

Compare expression of checked genes

Lus10016722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.