Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61980 1043 / 0 AGD1 ARF-GAP domain 1 (.1) AT5G13300 977 / 0 AGD3, VAN3, SFC ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) AT1G10870 587 / 0 AGD4 ARF-GAP domain 4 (.1) AT1G60860 580 / 0 AGD2 ARF-GAP domain 2 (.1) AT5G54310 105 / 1e-23 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G17660 96 / 4e-22 AGD15 ARF-GAP domain 15 (.1) AT3G07940 91 / 3e-19 Calcium-dependent ARF-type GTPase activating protein family (.1) AT4G05330 89 / 7e-19 AGD13 ARF-GAP domain 13 (.1) AT4G21160 89 / 1e-18 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT4G17890 75 / 4e-14 UBP20, AGD8 ARF-GAP domain 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036018 [exp] 1484 / 0 AT5G61980 1009 / 0.0 ARF-GAP domain 1 (.1) Lus10001799 [exp] 934 / 0 AT5G13300 1201 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10002572 [exp] 883 / 0 AT5G13300 1149 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10030568 [exp] 577 / 0 AT1G60860 925 / 0.0 ARF-GAP domain 2 (.1) Lus10030921 [exp] 299 / 3e-90 AT1G60860 608 / 0.0 ARF-GAP domain 2 (.1) Lus10027249 [exp] 97 / 3e-22 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10038582 [exp] 100 / 4e-22 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1) Lus10018445 [exp] 94 / 5e-20 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1) Lus10011238 [exp] 93 / 1e-19 AT5G54310 261 / 5e-82 NEVERSHED, ARF-GAP domain 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105500 [exp] 1113 / 0 AT5G61980 1110 / 0.0 ARF-GAP domain 1 (.1) Potri.003G163200 [exp] 999 / 0 AT5G13300 1146 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Potri.001G066800 [exp] 993 / 0 AT5G13300 1192 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Potri.011G127000 [exp] 106 / 8e-24 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G406300 [exp] 105 / 1e-23 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.004G035800 [exp] 101 / 2e-22 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G044100 [exp] 100 / 8e-22 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.012G036900 [exp] 95 / 1e-21 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.001G372000 [exp] 87 / 2e-18 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.001G026400 [exp] 86 / 2e-18 AT3G07940 211 / 4e-66 Calcium-dependent ARF-type GTPase activating protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF00169 [flax] [poplar] PH PH domain CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0465 [flax] [poplar] PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10016724 pacid=23149149 polypeptide=Lus10016724 locus=Lus10016724.g ID=Lus10016724.BGIv1.0 annot-version=v1.0 ATGCACTTCGCCAAGCTTGATGACTCGCCGATGTTTCGGCAACAGATGCAATGCATGGAAGAAAACGCAGAGATGATGCGAGGAAGATGTTTAAAGTTCT ATAAGGGATGTCGAAAGTACACAGAAGTCCTGGGTGAGGAGTATGATGGAGATGTTGCTTTTGCCACTGCTCTTGAATCATTTGGAGGTGGACATAATGA TCCTATATGTGTTGCTTTTGGAGGCCCTGTTATGAACAAATTTACAATTGCCTTGAGAGAAATCGGGACTTACAGAGAAGTCCTCAGGTCACAGGTGGAG CATATGCTGAGTGATAGATTGTTACAATTCGTGAATGTTGACCTGCAAGATATCAAGGAAGCAAGGAAACGCTTCGATAAGGCCTCCTTGATATATGAAC AGGCCCGAGATAAGTTCCTATCTTTGAGGAAGAGCACTAGGATTGATGTAGCCACCGTAATAGAGGAGGTCAGTGCTCTCTCTATTGTTGAAGCAAAGAA GAGGTATGAATTTTTAGAGTCTGTAAGCGGCATGATGGATGCTCATCTTCGATTCTTTAAGCAGGGATATGAGCTACTACATCAGATGGAGCCATTTATT AACCAGGTCCTGGCTTATGCACAGCAATCTAGGGAATGTTCTAATTATGAGCAGGCTTCTCTTAATGAAAGGATGCATGAATATATGAGGCAAATTGACC GAGAGAATAGGCATTCCTTACATGGAAATCCTGGTTCACCTCATGTTGATGGGAGGCCTTGTATTAGGAGTTCCCAAAAAGTTATAGAGGCAGTTATGGA ATCTGCAACTCATGGGAAGGTCGAAACCATCCGACAAGGTTATCTGTCAAAGCGTTCGTCAAATTTGAGGGGTGATTGGAAGAGACGCTTTTTTGTGCTT GATAGTCGAGGGTTACTTTATTACTACCGCAAACCCTTCGTATGGGCGCACGCAGGTGGGACTCATTCAACTCTACAGAGGAATGCATCCTCCGATAATG GTCCTGGATTACTGAGTCGATGGCTCTCTTCTCATTACCATGGCAGCGTGCATGATGAGAAAACAGCAGCACGTCACACTGTAAACCTGCTAACATCAAC AATCAAGGTTGATGCAGATCAGACAGATTTAAGATTCTGCTTCCGAATCATTTCACCAGTCAAAGTATATACTTTACAGGCCGAAAATGCTGTTGATCAA ATGGATTGGATTGAGAAAATAACTGGAGTCATCACTTCATTGTTGAGTTTACAAACACCTGAAAAATGTATTTCAACAGCCGCATTGGGATTCAGTGATA GTCAATCTTTCAGTGATGGTAGCTCATTAATAGATTCTCATGACATCGATAATTCAAATTTTGAGGAATTCACATCTAGTAATGTTATCGGTGGGAGCCA TTTAAACCCATCAAGAAATTTGCTACCAGCTAGCAGCATAAAAGGTCAAAAGCCAATCAATCTCCTAAGAAGAGTGCCTGGGAATGACAGATGTGCAGAC TGTGGTGCACCTGAACCAGATTGGGCTTCCTTGAATCTTGGTGTCCTCATATGCATTGAATGTTCTGGTGTTCATCGCAATCTTGGTGTCCACATATCAA AGGTAAGATCATTAACACTTGATGTCAAAGCCTGGGAGCCATCTGTATTAATGTTGTTCCAATCGCTGGGGAATCACTGTGCGAATTCAATCTGGGAGGA ATTAATGAATTCAGATGCTTCCACTACCATGCATGCTGCTGAAGAAATGTCAAAGGGGTCCTCGAAAACTGATAAGCAAAGGCTCTTCAATATTAAAAGA CCGAATCACAATGATCCAATCACACTCAAGGAGCAGTTCATCCATGCAAAATACAAAGAAAAGATTTTTGTTCGTAAGATAAAGGACTTTCCTTCAGTCT CACAACAGTTGTGGAAATCTGTGTGGGGGAATGACAAAAAAGGAGTTTACCGCCAGATTGTCTGCTCTGGAATAGATTTAAATGCAATATATATGCAATC CTCTATTAGTGAAGATCAACCACCTATGGAATTGTCTGATAAATGTTCTGTCCTTCACCTGGCCTGCCTGAATACTGATATTGGAATGGTTGAACTACTT CTACAATATGGGGCAAATGTGAATGCTTTTGATTCTAAAAACCAGACTCCATTACATCATTGTGTAATTGGAAAACGAACTGCTATTGCAAGGTTGCTTC TTGCCAGGGGCGCAGATCCACGAGCTGTAAGCAGAGATGGAAATACAGCTCTGAAGCTTTTGTCTCAGTCCTCTTTGGATGATAATGAGCTAGAAGGTTT GTTGGCAGGAAAATGA
AA sequence Show only first row Show all	>Lus10016724 pacid=23149149 polypeptide=Lus10016724 locus=Lus10016724.g ID=Lus10016724.BGIv1.0 annot-version=v1.0 MHFAKLDDSPMFRQQMQCMEENAEMMRGRCLKFYKGCRKYTEVLGEEYDGDVAFATALESFGGGHNDPICVAFGGPVMNKFTIALREIGTYREVLRSQVE HMLSDRLLQFVNVDLQDIKEARKRFDKASLIYEQARDKFLSLRKSTRIDVATVIEEVSALSIVEAKKRYEFLESVSGMMDAHLRFFKQGYELLHQMEPFI NQVLAYAQQSRECSNYEQASLNERMHEYMRQIDRENRHSLHGNPGSPHVDGRPCIRSSQKVIEAVMESATHGKVETIRQGYLSKRSSNLRGDWKRRFFVL DSRGLLYYYRKPFVWAHAGGTHSTLQRNASSDNGPGLLSRWLSSHYHGSVHDEKTAARHTVNLLTSTIKVDADQTDLRFCFRIISPVKVYTLQAENAVDQ MDWIEKITGVITSLLSLQTPEKCISTAALGFSDSQSFSDGSSLIDSHDIDNSNFEEFTSSNVIGGSHLNPSRNLLPASSIKGQKPINLLRRVPGNDRCAD CGAPEPDWASLNLGVLICIECSGVHRNLGVHISKVRSLTLDVKAWEPSVLMLFQSLGNHCANSIWEELMNSDASTTMHAAEEMSKGSSKTDKQRLFNIKR PNHNDPITLKEQFIHAKYKEKIFVRKIKDFPSVSQQLWKSVWGNDKKGVYRQIVCSGIDLNAIYMQSSISEDQPPMELSDKCSVLHLACLNTDIGMVELL LQYGANVNAFDSKNQTPLHHCVIGKRTAIARLLLARGADPRAVSRDGNTALKLLSQSSLDDNELEGLLAGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10016724 [exp]	0	1
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10037917 [exp]	1.7	0.8454
					Lus10000458 [exp]	2.8	0.7811
AT4G36050			endonuclease/exonuclease/phosp...		Lus10028455 [exp]	3.0	0.8051
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Lus10011024 [exp]	3.0	0.7779
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10016745 [exp]	5.5	0.8319
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10019587 [exp]	5.5	0.7842
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Lus10012961 [exp]	6.2	0.7405
AT3G58160		XI-16, MYA3, AT...	MYOSIN XI-16, MYOSIN A3, MYOSI...		Lus10014753 [exp]	10.5	0.7876
AT3G57570			ARM repeat superfamily protein...		Lus10026305 [exp]	10.8	0.6994
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10011018 [exp]	11.5	0.7578

Compare expression of checked genes

Lus10016724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.