Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61990 132 / 3e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 117 / 4e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 116 / 5e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62680 112 / 2e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 111 / 4e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G19290 109 / 2e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46100 108 / 3e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 105 / 3e-26 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G62914 103 / 2e-25 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G02150 103 / 2e-25 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036019 [exp] 214 / 4e-71 AT1G53330 64 / 3e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 111 / 5e-28 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 110 / 8e-28 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 110 / 1e-27 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036865 [exp] 107 / 7e-27 AT1G12700 273 / 1e-83 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10007468 [exp] 106 / 2e-26 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014244 [exp] 103 / 2e-25 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10021074 [exp] 102 / 2e-25 AT1G62930 273 / 5e-86 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028943 [exp] 99 / 4e-25 AT5G01110 299 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105400 [exp] 229 / 2e-69 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 121 / 2e-31 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G045000 [exp] 118 / 1e-30 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271200 [exp] 115 / 8e-30 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G149800 [exp] 115 / 1e-29 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271400 [exp] 115 / 2e-29 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 114 / 2e-29 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 114 / 4e-29 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 114 / 4e-29 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G150100 [exp] 112 / 1e-28 AT1G62930 442 / 8e-149 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10016725 pacid=23149090 polypeptide=Lus10016725 locus=Lus10016725.g ID=Lus10016725.BGIv1.0 annot-version=v1.0 ATGGAGAAAGCTCTATCTTTATTCGAAGAAATGGTACACAAGGGCTGTCACTCTACGCATGCTTTGAATGCTTTCGTTGATGGCTTCTGCAAATTGGGGA AGCTGAACCAAGCCAACCAACTGTTGGCAGATACACAGATCGCTCCAAATGAGGTAACGTATACTATTCTGATTGATTGTCATTGCAAGAGTGGGATGAT GAATGAGGCAGAACGACTCTTTGTTGAGATGCAAAACAAGAATCTGATGCCAAATGTTTTAACATACACTACACTCTTACATGGTTATGAAAGGATGGGA AGAAGAAAAGAGATTCTTGGTATCTTTGATGAGATGGTTGCCAAAAATATAGAGCTCGATGAGGTCACGTGGAAGCTGATAATTGATACTTGTTTGAAAG AAAGTAACTTGTTGAAGGCTTTGAAGTTGGTAGATGACATGGCACTGAGCGGTGCAAAAGTAAGTGAAACCATATATGCATTGCTGGTTAATTCCATGTG TGAAGCTGAGAGTGTCCTTGAAGACTTCAAATTGCTTGATGAAGCCAATGCACAACCATATAGGCTTAGCATTAGTACCTGCAGGACTCTCATTCATGGT CTTCACAGAGCAGGAAGGGCAGACAAAGCAAACAGCTTTCAGAGGGCATTAGTAGGTTAA
AA sequence Show only first row Show all	>Lus10016725 pacid=23149090 polypeptide=Lus10016725 locus=Lus10016725.g ID=Lus10016725.BGIv1.0 annot-version=v1.0 MEKALSLFEEMVHKGCHSTHALNAFVDGFCKLGKLNQANQLLADTQIAPNEVTYTILIDCHCKSGMMNEAERLFVEMQNKNLMPNVLTYTTLLHGYERMG RRKEILGIFDEMVAKNIELDEVTWKLIIDTCLKESNLLKALKLVDDMALSGAKVSETIYALLVNSMCEAESVLEDFKLLDEANAQPYRLSISTCRTLIHG LHRAGRADKANSFQRALVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016725 [exp]	0	1
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10014655 [exp]	2.0	0.7644
AT4G18050		ABCB9, PGP9	ATP-binding cassette B9, P-gly...		Lus10004583 [exp]	3.7	0.7842
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10035294 [exp]	6.5	0.6811
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10021554 [exp]	7.9	0.7644
AT4G04750			Major facilitator superfamily ...		Lus10018957 [exp]	10.5	0.7566
AT5G66660			Protein of unknown function (D...		Lus10018880 [exp]	12.1	0.7307
AT5G42905			Polynucleotidyl transferase, r...		Lus10006008 [exp]	12.2	0.7226
AT1G52780			Protein of unknown function (D...		Lus10033064 [exp]	13.3	0.7217
AT4G02250			Plant invertase/pectin methyle...		Lus10001464 [exp]	13.4	0.7392
AT4G28940			Phosphorylase superfamily prot...		Lus10034939 [exp]	16.7	0.7828

Compare expression of checked genes

Lus10016725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.