Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61990 166 / 2e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 160 / 2e-45 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G63230 140 / 1e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 142 / 3e-39 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G41170 140 / 4e-39 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G53700 140 / 1e-38 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G64583 139 / 1e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 139 / 3e-38 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G07290 139 / 7e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09820 138 / 8e-38 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036020 [exp] 380 / 8e-128 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016729 [exp] 343 / 2e-118 AT5G39710 243 / 4e-73 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 147 / 6e-41 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10027916 [exp] 139 / 6e-38 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 139 / 9e-38 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019524 [exp] 139 / 9e-38 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 138 / 1e-37 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021074 [exp] 134 / 2e-37 AT1G62930 273 / 5e-86 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010410 [exp] 137 / 4e-37 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105400 [exp] 251 / 8e-78 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G035700 [exp] 166 / 1e-47 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.005G050180 [exp] 161 / 2e-46 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 155 / 2e-44 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050300 [exp] 155 / 3e-44 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 155 / 5e-44 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 153 / 4e-43 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050240 [exp] 150 / 2e-42 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034300 [exp] 148 / 2e-42 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 149 / 5e-42 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10016726 pacid=23149122 polypeptide=Lus10016726 locus=Lus10016726.g ID=Lus10016726.BGIv1.0 annot-version=v1.0 ATGATGGACAGGGGAATAAAGCCAAATGTATATACTTATGGAGCGTTTATTCATGCATACTGTAGAGCAGGGCAAATGCATGCTGCACAGAATTGCTTCA CAGAGATGCTTGGCTATGGTATTGAACCTAATGACGTGGTATATACAGCCCTCGTTAATGGGCATTGCAAGGATGGTGACACGACACAGGCGTTCGCAAC GTTTAGATCTATGCTAGAAAAAGGCGTGCTACCGGATATTCAAACTTATAGTGCGTTCATCCATGGTCTTTCTATGATTGGAAAGCTTCAGGAATTTATG TCTGTTTTCTCTCAAATGCTTGAAAGAAATTTGGAACCTGATGTATTTTCTTATAACTCTCTCATTTCCGGCTTCCTTAAGCAAGGTGATATAGACGCGG CTTTTGAACTCCATGTTGATCTGTGTCAAAAAAATGTTGGTCCAAATATTGTTACTTATAATACACTTGTAAATGGACTTTTGAAGGCTGGCGAACTTGA TGAAATTCAAGTGAAGGGTTTGACTCGGAACAGTGTTACTTATGCCACAATGATTGATGGATACAGCAAATCTGGCAGTATAAAGCGGAAGCTGTTCCTC CTGATAGCTATGTATATTGTGCCCTGA
AA sequence Show only first row Show all	>Lus10016726 pacid=23149122 polypeptide=Lus10016726 locus=Lus10016726.g ID=Lus10016726.BGIv1.0 annot-version=v1.0 MMDRGIKPNVYTYGAFIHAYCRAGQMHAAQNCFTEMLGYGIEPNDVVYTALVNGHCKDGDTTQAFATFRSMLEKGVLPDIQTYSAFIHGLSMIGKLQEFM SVFSQMLERNLEPDVFSYNSLISGFLKQGDIDAAFELHVDLCQKNVGPNIVTYNTLVNGLLKAGELDEIQVKGLTRNSVTYATMIDGYSKSGSIKRKLFL LIAMYIVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016726 [exp]	0	1
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10022082 [exp]	7.9	0.9184
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016727 [exp]	15.7	0.9046
AT1G22060			unknown protein		Lus10033461 [exp]	18.0	0.8869
AT1G05055		ATGTF2H2, GTF2H...	general transcription factor I...		Lus10029294 [exp]	19.7	0.8559
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10042628 [exp]	20.5	0.8956
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10036020 [exp]	23.7	0.8908
AT1G31430			Pentatricopeptide repeat (PPR-...		Lus10004052 [exp]	26.3	0.8790
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10016048 [exp]	26.8	0.8880
AT2G22400			S-adenosyl-L-methionine-depend...		Lus10020217 [exp]	30.7	0.8860
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10034720 [exp]	33.2	0.8598

Compare expression of checked genes

Lus10016726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.