Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61990 345 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09820 229 / 1e-67 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G59900 229 / 9e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 224 / 6e-65 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 219 / 2e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 213 / 3e-61 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09680 211 / 7e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 209 / 4e-60 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G22470 209 / 4e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G15630 209 / 5e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036020 [exp] 1085 / 0 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016729 [exp] 476 / 2e-165 AT5G39710 243 / 4e-73 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 236 / 6e-69 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 236 / 1e-67 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 230 / 7e-67 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012328 [exp] 218 / 2e-62 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 218 / 2e-62 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000364 [exp] 210 / 1e-59 AT1G22960 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 211 / 2e-59 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105400 [exp] 551 / 0 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G040200 [exp] 235 / 9e-68 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034300 [exp] 225 / 1e-67 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 227 / 7e-67 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G276500 [exp] 228 / 3e-66 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 225 / 4e-66 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 225 / 5e-66 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 223 / 3e-65 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 223 / 1e-64 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046100 [exp] 221 / 1e-64 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10016727 pacid=23149058 polypeptide=Lus10016727 locus=Lus10016727.g ID=Lus10016727.BGIv1.0 annot-version=v1.0 ATGGCCGTTTTGTGTTACCGGAACCTTCAAGTTTTCAAGAATCGCAACATAAATGTGGTACTCGGGGGGAGAATCGGTCGCCTCAAATGGCAGTCGTTAA GCTCAACCGCGGGTGGCCAGGACAACAACAGCACCACAGTGAAGGAGATAGCGGTGTTTCTCGAGCAACACAACTGGCAGCATCTCATCGGGTCGTCGCC AATCCGCCCTATGCTCAACCCGGAGGTTGTGCACTCTGTCATCAGACAGAAGCTCGTAAAAGACCCTCTGCGCTTACTTGGTTTCTTCAATTGGACACAT TATCGTTTGGGTATCCTTCCACATCTCTCTTCATTCTCGATGCTAGCTTTACATCTATGTGACGCCCGGCTTTTTGCTCCTGCCAGTGGGGTCTTAGATC AAATGCTGGAAATAGGGAGGTCGCATCTAGATATTTTGGATTCTGTAATGGAGAGTTGCAGAGAGGTTAGTGGCAATGACGACGCCTTGGTTTTTCAGAT ACTGATTAATGCTTACAAGAAAAAGGAAATGTTGGATCATGCCGTAGATGTCTTTTTAGGTGCCAAATCCAATGGTTTTTTAGTCGATTTGCTGTGCTGC AACTCGCTTTTAAAGGATCTGGTTAAACGTAATAGATTGGAGCTGTTTTGGAAAGTGTATGAGGGGATGTTAGATGTTAAGATAGTTGCTGATGTTTACA CCTACACAAATGTGATAAATGCGCAATGCAAGCAAGGGAATGTTAAAGAGGGCCAACGTTTGCTTTCTGAAATGGAAGAGAAAGGTTGCAGTCCAAACTT GGTCACTTACAATGTGTTGATTGGTGGGTTGTGTAGAGCTGGGGATTTTGATGGAGCTATAGAGTTAAAGAAGAAGATGATTGATAAGGGTTTTATTCCA GACAGCTATACTTTCACTCTTCTTATTGATGGCTATTGTAAACAGAAACGATCAGCTGACGCCAAATTAGTGTTGGAGGAGATGTATCTCTTGGGTTTCA AGCCAGACCATATTTGTTATACTGCGTTGATTGACGGGCTAACCAAAGAAGGTAAATTGGGAGAAGCAATTCAATTGAAACAGGATATGTTTACTCGTGG AGTTCAACCTAACTATTTAACATATAATGTGTTGCTCAGTGGACTGTGTAAAGCTGGCCAGATGGAGAAGGCAGAAGCCCTTTTCAGTGAAATGCTTGCT GTTGGGCTTAAACCTAATGCTTATACTTATGGTTTTTTGATTGATGGGTACTGCAAGGTGCTGAATATAGCTAAAGCTTGTGCTTTTCTGGTTGAAATGA AGAAGATGAACTTGTTTCCCACTGCATACACATGTGGCGCGATATTCAATGGCCTTTGCCAAATTGGAGATCTTAATGGTGCTGGTATATTGTTTGAGGA GATGATTTCTTGGGGTGTCAAACCAAATCTTTTGTTCTACACAACTCTGATCAAAGGGACTGTCCAGCAAGGAAGATTTCAGGAGGCCATAAAACATTTG AAGGTCATGAAGGAGAAAGGGCCTCTCCCTGACCTTTTTTGCTACAATATGGGCATAATTGGTCTTTGCAAGGCCAATAAATTTTAA
AA sequence Show only first row Show all	>Lus10016727 pacid=23149058 polypeptide=Lus10016727 locus=Lus10016727.g ID=Lus10016727.BGIv1.0 annot-version=v1.0 MAVLCYRNLQVFKNRNINVVLGGRIGRLKWQSLSSTAGGQDNNSTTVKEIAVFLEQHNWQHLIGSSPIRPMLNPEVVHSVIRQKLVKDPLRLLGFFNWTH YRLGILPHLSSFSMLALHLCDARLFAPASGVLDQMLEIGRSHLDILDSVMESCREVSGNDDALVFQILINAYKKKEMLDHAVDVFLGAKSNGFLVDLLCC NSLLKDLVKRNRLELFWKVYEGMLDVKIVADVYTYTNVINAQCKQGNVKEGQRLLSEMEEKGCSPNLVTYNVLIGGLCRAGDFDGAIELKKKMIDKGFIP DSYTFTLLIDGYCKQKRSADAKLVLEEMYLLGFKPDHICYTALIDGLTKEGKLGEAIQLKQDMFTRGVQPNYLTYNVLLSGLCKAGQMEKAEALFSEMLA VGLKPNAYTYGFLIDGYCKVLNIAKACAFLVEMKKMNLFPTAYTCGAIFNGLCQIGDLNGAGILFEEMISWGVKPNLLFYTTLIKGTVQQGRFQEAIKHL KVMKEKGPLPDLFCYNMGIIGLCKANKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016727 [exp]	0	1
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10036020 [exp]	1.0	0.9735
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Lus10001987 [exp]	3.3	0.9476
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10006876 [exp]	3.9	0.9611
AT1G22060			unknown protein		Lus10033461 [exp]	4.0	0.9454
AT3G55160			unknown protein		Lus10007253 [exp]	4.2	0.9673
AT1G31430			Pentatricopeptide repeat (PPR-...		Lus10004052 [exp]	5.0	0.9408
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	6.6	0.9601
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10022082 [exp]	8.0	0.9562
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10019588 [exp]	8.2	0.9353
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003102 [exp]	9.2	0.9586

Compare expression of checked genes

Lus10016727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.