Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25080 413 / 8e-146 CHLM magnesium-protoporphyrin IX methyltransferase (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016730 [exp] 582 / 0 AT4G25080 469 / 3e-168 magnesium-protoporphyrin IX methyltransferase (.1.2.3.4.5) Lus10036021 [exp] 581 / 0 AT4G25080 472 / 5e-169 magnesium-protoporphyrin IX methyltransferase (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G106600 [exp] 446 / 8e-159 AT4G25080 453 / 1e-161 magnesium-protoporphyrin IX methyltransferase (.1.2.3.4.5) Potri.015G105702 [exp] 231 / 2e-75 AT4G25080 217 / 5e-71 magnesium-protoporphyrin IX methyltransferase (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07109 [flax] [poplar] Mg-por_mtran_C Magnesium-protoporphyrin IX methyltransferase C-terminus CL0063 [flax] [poplar] NADP_Rossmann PF05175 [flax] [poplar] MTS Methyltransferase small domain
Representative CDS sequence Show only first row Show all	>Lus10016728 pacid=23149112 polypeptide=Lus10016728 locus=Lus10016728.g ID=Lus10016728.BGIv1.0 annot-version=v1.0 ATGGCGCGAGCCTCCTCCCTATTTTCTCCAATTTCATTCCACCACTTGTCATTCTCTCCGCTGTCTGCCAAATCCAGAGTCTCTACCAGAACCTTGACAG TCGGCGCAATTCCTCCCATATCCACAGCCACCCCGTTGGAGCTCCCTCCTCTGGATGGAACAACAATCGCCGTCCTGGGAGGAGGATCCGTGGCCGCACT AGCAGCAGCTCTGTCCTTGACAGACCCGGAGAGGCGCCGCAAACTCCAAGCCGTGGAAGTAGGTGGAGGCGACAAGGAAGTGGTGAAGGATTACTTCAAC AATTCCGGGTTCCAGAGGTGGAGAAAGATCTACGGAGAGACGGACGACGTCAACCGGGTGCAGCGGGACATTCGATTGGGGCACTCCAAGACTGTTGAGA ACACAATGGTTATGCTCAAGGAAGAAGGGGCTCTCCGAGGCGTCACCGTTTGCGACGCCGGGTGCGGAACAGGTTTGCTGTCGATTCCGCTCGCTAAAGA AGGGGCAATCGTTTACTCCAGTGACATCTCCGCAGCTATGGTTGCCGAGGCTGAGAAGCAGGCGAAAGAGCAGCTGGTGGGCAAAAATGAAGAAGTGGTA ATGCCGAAATTCGAAGTGAAGGATCTGGAGAGCTTAGAAGGGAAATACAACACGGTGATATGCCTGGACGTGTTGATACATTACCCGCAGAATAAAGCAG ATGGGATGATTGGGCATCTTGCGTCACTGGCAGAGAAACGGTTGATATTGAGCTTTGCCCCAAAGACATTCTACTACGATCTGCTCAAGAGAATTGGGGA GTTGTTTCCTGGGCCGTCAAAGGCAACCAGGGCATATCTGCACTCCGAGGCTGATGTTGAGAGAGCTTTGAACAAGGTTGGATGGAAAATAAGTAAGAGA GGTCTTATCACTACCCAGTTCTACTTCTCCAGGCTCGTTGAAGCCATCCCTGCTCGTTAA
AA sequence Show only first row Show all	>Lus10016728 pacid=23149112 polypeptide=Lus10016728 locus=Lus10016728.g ID=Lus10016728.BGIv1.0 annot-version=v1.0 MARASSLFSPISFHHLSFSPLSAKSRVSTRTLTVGAIPPISTATPLELPPLDGTTIAVLGGGSVAALAAALSLTDPERRRKLQAVEVGGGDKEVVKDYFN NSGFQRWRKIYGETDDVNRVQRDIRLGHSKTVENTMVMLKEEGALRGVTVCDAGCGTGLLSIPLAKEGAIVYSSDISAAMVAEAEKQAKEQLVGKNEEVV MPKFEVKDLESLEGKYNTVICLDVLIHYPQNKADGMIGHLASLAEKRLILSFAPKTFYYDLLKRIGELFPGPSKATRAYLHSEADVERALNKVGWKISKR GLITTQFYFSRLVEAIPAR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016728 [exp]	0	1
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016730 [exp]	1.0	0.9770
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10036021 [exp]	2.8	0.9603
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Lus10025445 [exp]	3.9	0.9536
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10037012 [exp]	4.6	0.9418
AT5G46580			pentatricopeptide (PPR) repeat...		Lus10000897 [exp]	4.9	0.9414
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10006751 [exp]	5.2	0.9375
AT4G01310			Ribosomal L5P family protein (...		Lus10007915 [exp]	5.9	0.9482
AT1G64510			Translation elongation factor...		Lus10032419 [exp]	7.5	0.9522
AT2G18710		SCY1	SECY homolog 1 (.1)		Lus10008901 [exp]	8.1	0.9372
AT3G27690		LHCB2.3, LHCB2:...	LIGHT-HARVESTING CHLOROPHYLL B...		Lus10001169 [exp]	8.7	0.9259

Compare expression of checked genes

Lus10016728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.