Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39710 244 / 3e-73 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G15630 239 / 2e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 237 / 2e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 232 / 6e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74580 229 / 1e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19440 229 / 2e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G63400 220 / 9e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 219 / 5e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59900 221 / 8e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 216 / 1e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036020 [exp] 694 / 0 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016727 [exp] 502 / 1e-175 AT5G61990 345 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016726 [exp] 343 / 5e-118 AT5G61990 166 / 3e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 255 / 2e-77 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 254 / 4e-77 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 254 / 2e-75 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012037 [exp] 241 / 6e-73 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 234 / 6e-70 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019524 [exp] 219 / 2e-63 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105400 [exp] 449 / 1e-148 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 263 / 6e-80 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G276500 [exp] 255 / 2e-77 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G147700 [exp] 253 / 2e-77 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034300 [exp] 235 / 1e-72 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 238 / 3e-72 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 241 / 5e-72 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 237 / 7e-72 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 228 / 2e-68 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271400 [exp] 225 / 2e-67 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10016729 pacid=23149136 polypeptide=Lus10016729 locus=Lus10016729.g ID=Lus10016729.BGIv1.0 annot-version=v1.0 ATGTTGGATCATGCCGTTGATGTCTTTTCAGGTGCCAAATCCAATGGTTTTTTAGTCGATTTGCTGTGCTGCAACTCGCTTTTAAAGGATCTGGTTAAAC GTAATAGATTGGAGCTGTTTTGGAAAGTGTACGAGGGGATGTTAGATGCTAAGATAGTTGCTGATGTTTACACCTACACAAATGTGATAAATGCACATTG CAAGCAAGGGAATGTTAAAGAGGGCCAACGTTTGCTTTCTGAAATGGAAGAGAAAGGTTGCAGTCCTAACTTGGTCACTTACAATGTGTTGATTGGTGGG TTGTGTAGAGCTGGGGATTTCGATGGAGCTCTAGAGTTAAAGAAGAAGATGATTGATAAGGGTTTTATTCCAGACAGCTATACTTTCACTCTTCTTATTG ATGGCTATTGTAAACAGAGACGATCAGCTGACGCCAAATTAGTGTTAGAGGAGATGTATCTCTTGGGTTTCATGCCAGACCATATTTGTTATACTTCATT GATTGACGGGCTAACCAAAGAAGGTAAATTGGGAGAAGCAATTCAATTGAAGCAGGATATGTTTACTCGTGGAGTTCCACCAAACTTTTTAACATATAGT ATGTTGCTCAGTGGACTGTGTAAAGCTAGCCAGATGGAGAAGGCAGAAACCCTTTTCAGTGAAACCCTTTCCCAAATTGGAGATCTTAAAGGTGCTGGTA TATTGTTTGAGGAGATGATTTCTTGGGGTGTCAAACCAAATCTTATGTTCTACACAACTCTGATCAAAGGGGATGTCCAGAAAGGAAGGTTCCAGGAGGC CATAAAAACATTTCAAGCCCTCATTAATGGGCACTGCAAGGATGGTGCCACAACACAGGCGTTCTCAATGTTTAGATCTATGCTAGAAAAAGGCGTGCTA CCGGATATTCAAACTTATAGTGCGTTCATCCATGGTCTTTCTATGATTGGAAAGCTTCAGGAAGCTATGTCTGTTTTCTCTCAAATGCTTGAAAGAAATT TGGAACCTGATGTATTTTCTTATAACTCTCTCATTTCCGGCTTCCTTAAGCAAGGTGATATAGACGCGGCTTTTGAACTCCATGTTGATCTGTGTCAAAA AAATGTTGGTCCAAATATTGTTACTTATAATACACTTGTAAATGGACTTTTGAAGGCTGGCGAACTTGATGAAATTCAAGTGAAGGGTTTGACTCGGAAC AGTGTTACTTATGCCACAATGATTGATGGATACAGCAAATCTGGCAGTATAAAGCGGAAGCTGTTCCTCCTGATAGCTATGTATATTGTGCCCTGA
AA sequence Show only first row Show all	>Lus10016729 pacid=23149136 polypeptide=Lus10016729 locus=Lus10016729.g ID=Lus10016729.BGIv1.0 annot-version=v1.0 MLDHAVDVFSGAKSNGFLVDLLCCNSLLKDLVKRNRLELFWKVYEGMLDAKIVADVYTYTNVINAHCKQGNVKEGQRLLSEMEEKGCSPNLVTYNVLIGG LCRAGDFDGALELKKKMIDKGFIPDSYTFTLLIDGYCKQRRSADAKLVLEEMYLLGFMPDHICYTSLIDGLTKEGKLGEAIQLKQDMFTRGVPPNFLTYS MLLSGLCKASQMEKAETLFSETLSQIGDLKGAGILFEEMISWGVKPNLMFYTTLIKGDVQKGRFQEAIKTFQALINGHCKDGATTQAFSMFRSMLEKGVL PDIQTYSAFIHGLSMIGKLQEAMSVFSQMLERNLEPDVFSYNSLISGFLKQGDIDAAFELHVDLCQKNVGPNIVTYNTLVNGLLKAGELDEIQVKGLTRN SVTYATMIDGYSKSGSIKRKLFLLIAMYIVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10016729 [exp]	0	1
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10035815 [exp]	2.8	0.8737
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10040013 [exp]	7.7	0.8303
AT3G45100		SETH2	UDP-Glycosyltransferase superf...		Lus10022925 [exp]	7.9	0.8425
AT3G27325			hydrolases, acting on ester bo...		Lus10032122 [exp]	9.2	0.8860
AT5G36930			Disease resistance protein (TI...		Lus10042165 [exp]	12.1	0.8656
AT5G06970			Protein of unknown function (D...		Lus10008663 [exp]	14.3	0.8749
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003747 [exp]	15.7	0.8399
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10007121 [exp]	16.6	0.8751
AT1G01220		AtFKGP	Arabidopsis thaliana L-fucokin...		Lus10005982 [exp]	24.5	0.8635
AT4G00440			Protein of unknown function (D...		Lus10028148 [exp]	25.7	0.8700

Compare expression of checked genes

Lus10016729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.