Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25080 412 / 1e-145 CHLM magnesium-protoporphyrin IX methyltransferase (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016728 [exp] 582 / 0 AT4G25080 470 / 2e-168 magnesium-protoporphyrin IX methyltransferase (.1.2.3.4.5) Lus10036021 [exp] 576 / 0 AT4G25080 472 / 5e-169 magnesium-protoporphyrin IX methyltransferase (.1.2.3.4.5) Lus10017367 [exp] 41 / 0.001 AT3G20020 636 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G106600 [exp] 449 / 5e-160 AT4G25080 453 / 1e-161 magnesium-protoporphyrin IX methyltransferase (.1.2.3.4.5) Potri.015G105702 [exp] 233 / 3e-76 AT4G25080 217 / 5e-71 magnesium-protoporphyrin IX methyltransferase (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07109 [flax] [poplar] Mg-por_mtran_C Magnesium-protoporphyrin IX methyltransferase C-terminus CL0063 [flax] [poplar] NADP_Rossmann PF05175 [flax] [poplar] MTS Methyltransferase small domain
Representative CDS sequence Show only first row Show all	>Lus10016730 pacid=23149086 polypeptide=Lus10016730 locus=Lus10016730.g ID=Lus10016730.BGIv1.0 annot-version=v1.0 ATGGCGCGAGCCTCCTCCCTATTTTCTCCAATTTCATTCCACCACTTGTCATTCTCTCCGCTGTCTGCCAAATCCAGAGTCTCTACCAGAACCTTGACAG TCGGCGCAATTCCTCCCATATCCACAGCCACCCCGTTGGAGCTCCCTCCTCTGGATGGAACAACAATCGCCGTCCTGGGAGGAGGATCCGTGGCCGCACT AGCAGCAGCTCTGTCCTTGACAGACCCGGAGAGGCGCCGCAAACTCCAAGCCGTGGAAGTAGGTGGAGGCGACAAGGAAGTGGTGAAGGATTACTTCAAC AATTCCGGGTTCCAGAGGTGGAGAAAGATCTACGGAGAAACGGACGACGTCAACCGGGTGCAGCGGGACATTCGATTGGGGCACTCCAAGACTGTTGAGA ACACAATGGTTATGCTCAAGGAAGAAGGGGCTCTCCGAGGCGTCACCGTTTGCGACGCCGGGTGCGGAACAGGTTTGCTGTCGATTCCGCTCGCTAAAGA AGGGGCAATCGTTTACTCCAGTGACATCTCCGCAGCTATGGTCGCCGAGGCTGAGAAGCAGGCGAAAGAGCAGCTAGTGGGCAAAAATGAAGAAGAAGTT GTAATGCCGAAATTCGAAGTGAAGGATCTGGAGAGCTTAGAAGGGAAATACAACACGGTGATATGCCTGGACGTGTTGATACATTACCCGCAGAATAAAG CAGATGGGATGATTGGGCATCTGGCGTCACTGGCAGAGAAACGGTTGATATTGAGCTTTGCCCCAAAGACATTCTACTACGATCTGCTCAAGAGAATTGG GGAGTTGTTTCCTGGGCCTTCCAAGGCAACCAGGGCATATCTGCACTCGGAAGCTGATGTTGAGAGAGCATTGAACAAGGTTGGATGGAAAATAAGCAAG AGAGGTCTTATCACTACCCAGTTCTATTTCTCCAGGCTCGTCGAAGCCATCCCTGCTCGTTAA
AA sequence Show only first row Show all	>Lus10016730 pacid=23149086 polypeptide=Lus10016730 locus=Lus10016730.g ID=Lus10016730.BGIv1.0 annot-version=v1.0 MARASSLFSPISFHHLSFSPLSAKSRVSTRTLTVGAIPPISTATPLELPPLDGTTIAVLGGGSVAALAAALSLTDPERRRKLQAVEVGGGDKEVVKDYFN NSGFQRWRKIYGETDDVNRVQRDIRLGHSKTVENTMVMLKEEGALRGVTVCDAGCGTGLLSIPLAKEGAIVYSSDISAAMVAEAEKQAKEQLVGKNEEEV VMPKFEVKDLESLEGKYNTVICLDVLIHYPQNKADGMIGHLASLAEKRLILSFAPKTFYYDLLKRIGELFPGPSKATRAYLHSEADVERALNKVGWKISK RGLITTQFYFSRLVEAIPAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016730 [exp]	0	1
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016728 [exp]	1.0	0.9770
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10036021 [exp]	2.0	0.9702
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Lus10015317 [exp]	2.2	0.9462
AT3G45050			unknown protein		Lus10041331 [exp]	3.9	0.9522
AT3G08940		LHCB4.2	light harvesting complex photo...		Lus10035512 [exp]	4.2	0.9411
AT4G23890		NdhS, CRR31	NADH dehydrogenase-like comple...		Lus10001826 [exp]	4.5	0.9488
AT4G17560			Ribosomal protein L19 family p...		Lus10014467 [exp]	5.9	0.9389
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10006751 [exp]	7.1	0.9342
AT2G23610		ATMES3	ARABIDOPSIS THALIANA METHYL ES...		Lus10005400 [exp]	7.3	0.8976
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Lus10042812 [exp]	7.9	0.9191

Compare expression of checked genes

Lus10016730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.