Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61850 320 / 4e-106 LFY LFY3, LFY LEAFY 3, floral meristem identity control protein LEAFY (LFY) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022427 [exp] 539 / 0 AT5G61850 447 / 8e-156 LEAFY 3, floral meristem identity control protein LEAFY (LFY) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G106900 [exp] 429 / 9e-150 AT5G61850 433 / 3e-151 LEAFY 3, floral meristem identity control protein LEAFY (LFY) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0003 [flax] [poplar] SAM PF01698 [flax] [poplar] SAM_LFY Floricaula / Leafy protein SAM domain
Representative CDS sequence Show only first row Show all	>Lus10016732 pacid=23149143 polypeptide=Lus10016732 locus=Lus10016732.g ID=Lus10016732.BGIv1.0 annot-version=v1.0 ATGGATCCAGAAGCATTCACGGCGAGCTTGTTCAAGTGGGACCCAAGAACAGTAGCAGCAGCCAACAACAACAGGCAACAACAACAACAGCTGGTGGATG TTGCTGCTCCTCCTCCTCCGGCAGCAGCTATACAACAGCAGCAGATGGCGGCGGCGGCGGCGGTGTTAGCAATGAGAGGTGGTCCGGTGAGGGACATGGG TGGGCTTGAAGGGTTTTTCCAAAGCTACGGGATAAGGTACTACACCATTGCGAAGATAGCGGAGCTTGGTTTCACAATGAGAACCCTGCTGGAGATGAAG GAGGATGAGCTTGAGGAGATGATGAATAACGTCTCCCACATCTTTCGCTGGGAGCTCTCCGTCGGGGAGAGGTTCGGCATTAAGGCTGCTGTTAGAGCCG AACGCCGCCGCCTCGACGACCTTGACAGATCAAGACACCCTCACTCCAGCGACACCACCCTTGATGCTCTCTCCCAAGAAGGATTGTCGGAAGAGAGGAT GCAACAAGAGAAGGAAGCAGGAGGGAGTACGTGGGAGGCGGTGGGTGGAGGACAGAGGAAGCTGATGAAGCACAACCAGCAACAGCAGAGGCGGAGGAAG CATAAGCAACAACTGGAGGATGATCATCACCATAACAACAACGATGATCAGGAAGACGACGACGATGACGACTATAATAATAATAATAGTAGTAATGTGG TGGTGAGCGGCGGGGAGAGACAAAGGGAGCATCCTTTCATTGTAACGGAGCCTGGGGAGGTGGCACGTGGCAAGAAGAACGGCCTTGATTACCTCTTCCA TCTTTACGAGCAGTGCCGCGATTTCCTTTTCCAGGTTCAGTCCATGGCCAAGGAACGCGGTGAGAAATGCCCCAGCAAGGTGACGAATCAGGTGTTTAGG TACGCGAAGAAAGCAGGGGCGAGCTACATAAACAAGCCAAAGATGAGGCACTACGTGCATTGCTACGCGTTGCACTGTCTAGACGAGGAGGCTTCGAACG CGATGAGGAGGGTGTTCAAGGAAAGAGGGGAGAACGTAGGAGCGTGGAGGCAAGCTTGCTACAAGCCACTTGTGTCAATAGCAGGTAGACGAGGGTGGGA CATTGATGCCATCTTCAATGCACATCCTCGCCTTTCCATTTGGTACGTCCCAACAAAGCTTCGCCAGTTGTGCCACGCCGAGCGTAATACTACTAGTGCT AGTGCTAGTGCTAGTGCTAGTGCTGCTGCTTCTACCTCTGCACCTGTTAACCACCTTCCTTTCTGA
AA sequence Show only first row Show all	>Lus10016732 pacid=23149143 polypeptide=Lus10016732 locus=Lus10016732.g ID=Lus10016732.BGIv1.0 annot-version=v1.0 MDPEAFTASLFKWDPRTVAAANNNRQQQQQLVDVAAPPPPAAAIQQQQMAAAAAVLAMRGGPVRDMGGLEGFFQSYGIRYYTIAKIAELGFTMRTLLEMK EDELEEMMNNVSHIFRWELSVGERFGIKAAVRAERRRLDDLDRSRHPHSSDTTLDALSQEGLSEERMQQEKEAGGSTWEAVGGGQRKLMKHNQQQQRRRK HKQQLEDDHHHNNNDDQEDDDDDDYNNNNSSNVVVSGGERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLFQVQSMAKERGEKCPSKVTNQVFR YAKKAGASYINKPKMRHYVHCYALHCLDEEASNAMRRVFKERGENVGAWRQACYKPLVSIAGRRGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNTTSA SASASASAAASTSAPVNHLPF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10016732 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010759 [exp]	1.0	0.9999
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10026079 [exp]	2.4	0.9975
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018195 [exp]	3.0	0.9848
AT5G44940			F-box/RNI-like superfamily pro...		Lus10000726 [exp]	4.9	0.9881
AT1G02335		GL22	germin-like protein subfamily ...		Lus10023350 [exp]	6.0	0.9878
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10004008 [exp]	6.5	0.9761
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036927 [exp]	6.9	0.9852
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Lus10039852 [exp]	7.1	0.9838
AT3G54200			Late embryogenesis abundant (L...		Lus10007649 [exp]	7.7	0.9805
AT3G52610			unknown protein		Lus10022698 [exp]	10.7	0.9918

Compare expression of checked genes

Lus10016732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.