Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01630 313 / 2e-108 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G14820 135 / 9e-39 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G75170 103 / 3e-26 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G36640 101 / 2e-25 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G08690 98 / 4e-24 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22180 89 / 8e-21 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G09160 88 / 8e-20 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT4G39180 78 / 3e-16 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G34580 77 / 4e-16 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT5G63060 76 / 4e-16 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022428 [exp] 463 / 6e-168 AT1G01630 323 / 1e-112 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10004684 [exp] 342 / 1e-119 AT1G01630 326 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040252 [exp] 338 / 3e-118 AT1G01630 319 / 8e-111 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10001584 [exp] 151 / 4e-45 AT1G14820 320 / 2e-111 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10003699 [exp] 147 / 2e-43 AT1G14820 316 / 1e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10034577 [exp] 128 / 2e-36 AT1G14820 257 / 3e-87 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10026020 [exp] 100 / 3e-24 AT1G75170 397 / 4e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10010804 [exp] 98 / 3e-24 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10016312 [exp] 97 / 5e-24 AT1G75170 387 / 2e-136 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063966 [exp] 315 / 9e-109 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G068000 [exp] 301 / 9e-104 AT1G01630 361 / 3e-127 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.003G162100 [exp] 299 / 7e-103 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.008G135600 [exp] 154 / 2e-46 AT1G14820 323 / 2e-112 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.010G105400 [exp] 143 / 5e-42 AT1G14820 326 / 1e-113 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.015G023000 [exp] 141 / 4e-41 AT1G14820 276 / 5e-94 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025800 [exp] 108 / 5e-28 AT1G75170 408 / 2e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G123200 [exp] 108 / 7e-28 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025900 [exp] 100 / 5e-25 AT1G75170 369 / 3e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G261000 [exp] 99 / 2e-24 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10016733 pacid=23149033 polypeptide=Lus10016733 locus=Lus10016733.g ID=Lus10016733.BGIv1.0 annot-version=v1.0 ATGTTCCGTAATGGCGATAAACCATCAGATCCAGATGACAAGCTTGAAGTTGAGCGGACCAAGTTGAGTCTCTTGAGGGACTTGGCCCAGACCAAGGATC CTTCTTCCAAGGAAGTAGATGATGGGACACTGAGGAGGTTTCTGAGGGCAAGAGATATGGATGTAGAGACTGCATGTGCAATGTTCCTCAAATACCTCAA CTGGAAGCACAGTTTCCTCCCCAATGGCACCTCCTCTGTTTCCACCTCCGACATCTCCATCGACATTTCCCACAACAAGGTCTTCCTCCAAGGTACTGAT CGGACTGGCCGACCCATCTCCGTTGCTTTCGGAGGTCGCCATTTCCAGAACGGCGTTGACGAATTCAAGCGTTATGTAGTTTATGTCATCGAGAAACTCT GCGCAAGTATGGCGGAAGGACAAGAGAAATTTGTGGTGATCGGAGATCTGGAAGGTTGGGGTTATGCAAACAGCGACATTAGGGGTTATCTGGCTGCTCT GCACATTTTGCAGGATTACTACCCGGAAAGACTTGGTAAGCTGTTCATTGTGAATGTGCCATACATTTTCATGGCAGTGTGGAAAGTTATTTACCCCTTC ATCGACAGCAATACCAAAAGAAAGATTGTATTTGTGGATAACAAGAAGCTGAAATCCACACTTGTAGAGGACATTGATGAAAGCCAGCTGCCAGAGATAT ACGGAGGCAAACTGCCTTTAGTTCCTATCCACCTCACCTGA
AA sequence Show only first row Show all	>Lus10016733 pacid=23149033 polypeptide=Lus10016733 locus=Lus10016733.g ID=Lus10016733.BGIv1.0 annot-version=v1.0 MFRNGDKPSDPDDKLEVERTKLSLLRDLAQTKDPSSKEVDDGTLRRFLRARDMDVETACAMFLKYLNWKHSFLPNGTSSVSTSDISIDISHNKVFLQGTD RTGRPISVAFGGRHFQNGVDEFKRYVVYVIEKLCASMAEGQEKFVVIGDLEGWGYANSDIRGYLAALHILQDYYPERLGKLFIVNVPYIFMAVWKVIYPF IDSNTKRKIVFVDNKKLKSTLVEDIDESQLPEIYGGKLPLVPIHLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10016733 [exp]	0	1
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10001670 [exp]	2.0	0.8536
AT5G25510			Protein phosphatase 2A regulat...		Lus10013141 [exp]	4.2	0.8546
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005244 [exp]	7.3	0.8406
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Lus10039306 [exp]	9.2	0.8487
AT5G25510			Protein phosphatase 2A regulat...		Lus10008104 [exp]	10.7	0.8412
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005242 [exp]	13.8	0.8260
AT2G14520			CBS domain-containing protein ...		Lus10005259 [exp]	14.3	0.8072
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10024978 [exp]	15.1	0.8066
AT5G27990			Pre-rRNA-processing protein TS...		Lus10006795 [exp]	15.9	0.8173
AT2G26110			Protein of unknown function (D...		Lus10019517 [exp]	16.7	0.8015

Compare expression of checked genes

Lus10016733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.