Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51020 434 / 2e-155 CAA33, CRL constitutive activator of AAA-ATPase, crumpled leaf (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022429 [exp] 535 / 0 AT5G51020 417 / 2e-148 constitutive activator of AAA-ATPase, crumpled leaf (.1) Lus10043210 [exp] 431 / 1e-154 AT5G51020 393 / 1e-139 constitutive activator of AAA-ATPase, crumpled leaf (.1) Lus10032529 [exp] 359 / 3e-126 AT5G51020 333 / 3e-116 constitutive activator of AAA-ATPase, crumpled leaf (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G109800 [exp] 467 / 1e-168 AT5G51020 438 / 4e-157 constitutive activator of AAA-ATPase, crumpled leaf (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0116 [flax] [poplar] Calycin PF06206 [flax] [poplar] CpeT CpeT/CpcT family (DUF1001)
Representative CDS sequence Show only first row Show all	>Lus10016734 pacid=23149076 polypeptide=Lus10016734 locus=Lus10016734.g ID=Lus10016734.BGIv1.0 annot-version=v1.0 ATGGGAACTGGAACAAGCACCGGCGCTGACAAGGATTCCAATGGATGGGGCACAGTTCAGGGATTGGGCATGAAGACGCTGGTTTTGATCGGCGGAGCGC TTTTGGTAAAGCGGCTTACTAAATCTACTACCCGTTGGGACCATGCTCGTTTCGTCTCTCAATCTCTCACCGGCGAGAAGTTTTCGAGGGACCAAGCATC CAGGGATCCAGATAATTACTTCAACATTAGGATGTGTTTGTGCCCTGCCGCTGAGATGGTGGATGGTTCAAAGGCTTTGTATTTTGAGCAGGCGTTCTGG CGAACTCCCCAGAAACCCTTTCGACAGAGGTTTTACATGGTGAAGCCTTGTCCAAAGGAATCGAAATGTGATGTGGAGGTAAGTACATATGCAATTAGAG ATGCAGAGGAGTACAAAAATTTCTGCGATAGAGCGACCGATCAACGCCCGCTTCCTGAAGAAGTCATTGGTGATATTGCAGAGCACCTGACTACATTGCA TCTAAAACGCTGTGACCGTGGTAAACGCTGCTTGTATGAAGGTTCTACACCGCCAGGAGGATTCCCTAATACATGGAATGGTGCAACCTACTGTACCTCG GAACTTGGTGTGTTGAAGAACAACGAAGTGCATATGTGGGATAGGGGCTACGATGACGCTGGGAACCAGGTTTGGGGGGCGCGTGAACGTGCTTACGAAT TCAAGCCTGCACCAGCCTCTTGTAGTCTGAATGGGATAGTCTCTTCTTTAAACTTGCCACTTGCTCAATCAATTGACAAAAAGATACAAGGCTCATTTGT GTTGGAGGACTGA
AA sequence Show only first row Show all	>Lus10016734 pacid=23149076 polypeptide=Lus10016734 locus=Lus10016734.g ID=Lus10016734.BGIv1.0 annot-version=v1.0 MGTGTSTGADKDSNGWGTVQGLGMKTLVLIGGALLVKRLTKSTTRWDHARFVSQSLTGEKFSRDQASRDPDNYFNIRMCLCPAAEMVDGSKALYFEQAFW RTPQKPFRQRFYMVKPCPKESKCDVEVSTYAIRDAEEYKNFCDRATDQRPLPEEVIGDIAEHLTTLHLKRCDRGKRCLYEGSTPPGGFPNTWNGATYCTS ELGVLKNNEVHMWDRGYDDAGNQVWGARERAYEFKPAPASCSLNGIVSSLNLPLAQSIDKKIQGSFVLED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10016734 [exp]	0	1
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Lus10028120 [exp]	10.2	0.7269
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10026557 [exp]	26.5	0.6236
AT2G26680			unknown protein		Lus10030089 [exp]	28.7	0.6654
AT2G26540		ATUROS, ATDUF3,...	ARABIDOPSIS THALIANA UROPORPHY...		Lus10021755 [exp]	44.2	0.6196
AT5G66005			Expressed protein (.1.2.3)		Lus10035990 [exp]	53.6	0.6673
AT2G20725			CAAX amino terminal protease f...		Lus10039818 [exp]	74.1	0.6398
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Lus10015860 [exp]	110.7	0.6032
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038454 [exp]	115.3	0.5762
AT1G63610			unknown protein		Lus10016008 [exp]	127.0	0.6220
AT1G77610			EamA-like transporter family p...		Lus10018189 [exp]	133.8	0.6070

Compare expression of checked genes

Lus10016734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.