Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18390 536 / 0 Protein kinase superfamily protein (.1.2) AT1G25390 484 / 2e-163 Protein kinase superfamily protein (.1) AT5G38210 442 / 1e-146 Protein kinase family protein (.1) AT1G66880 417 / 1e-130 Protein kinase superfamily protein (.1) AT2G23450 287 / 7e-87 Protein kinase superfamily protein (.1.2) AT5G66790 268 / 1e-80 Protein kinase superfamily protein (.1) AT1G69910 250 / 9e-74 Protein kinase superfamily protein (.1) AT3G53840 242 / 1e-70 Protein kinase superfamily protein (.1) AT5G02070 238 / 3e-69 Protein kinase family protein (.1) AT5G58940 231 / 4e-68 CRCK1 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022432 [exp] 1320 / 0 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10029132 [exp] 526 / 6e-180 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2) Lus10028494 [exp] 390 / 1e-124 AT1G66880 480 / 2e-152 Protein kinase superfamily protein (.1) Lus10009150 [exp] 348 / 8e-114 AT1G66880 365 / 1e-120 Protein kinase superfamily protein (.1) Lus10032741 [exp] 299 / 3e-91 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000741 [exp] 270 / 2e-80 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019657 [exp] 261 / 1e-77 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036691 [exp] 258 / 9e-77 AT1G69910 665 / 0.0 Protein kinase superfamily protein (.1) Lus10014387 [exp] 251 / 5e-74 AT5G02070 493 / 8e-168 Protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G120800 [exp] 590 / 0 AT1G18390 525 / 2e-178 Protein kinase superfamily protein (.1.2) Potri.015G045101 [exp] 575 / 0 AT1G18390 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.017G118100 [exp] 505 / 9e-171 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.012G054725 [exp] 493 / 2e-166 AT1G18390 516 / 2e-176 Protein kinase superfamily protein (.1.2) Potri.010G121100 [exp] 491 / 4e-166 AT1G25390 524 / 1e-179 Protein kinase superfamily protein (.1) Potri.004G096900 [exp] 492 / 2e-165 AT5G38210 557 / 0.0 Protein kinase family protein (.1) Potri.015G044750 [exp] 486 / 7e-164 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2) Potri.017G118250 [exp] 486 / 2e-163 AT5G38210 542 / 0.0 Protein kinase family protein (.1) Potri.004G096550 [exp] 474 / 6e-159 AT5G38210 594 / 0.0 Protein kinase family protein (.1) Potri.004G097100 [exp] 472 / 7e-159 AT5G38210 525 / 4e-179 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10016737 pacid=23149084 polypeptide=Lus10016737 locus=Lus10016737.g ID=Lus10016737.BGIv1.0 annot-version=v1.0 ATGCCTCCGCCGCGCTGGAGAATTACAGTTTTGTCCCTTTTTGCCGCCGCAATCACTTTGATGGTATCGGCGGCATTAGAAGAAGAGCCGACTAGCAGAT ACCAATCCTGCAATCCCAAAAGCTGCGGCACGGGTCCAAACATAACCTACCCATTCTACATCCTGCGCAACAAGACCGATTATTGCGGCCTCCGTGGGTT CGGAATCCGCTGCCAATCTGGCAACCCAATCTATAGAACCTCCGCCGCCGACTACGTCATCCGGGACATCGCTTACGAGAACCAGACTTTCCTACTTGTG AACCAGCAGTTCATGTCCGAACAGGACGCTTCCGCAGCCGCCTGCCCAACTCCTCAGCAGAACTACTCCTTCGATCGGTCATCCGTCGAGTTCAGCCCCT TCCACGCCGACATCTACTTCTTCTACGGTTGTAACAACGCTTCGTCGTCCTCTTTCCAGGTTCCTGGTAGAGCCTCCCAGCTTCTTCCCTGCAATTCTTC TTCTTCTGATAATAATAAGACGTATCTAGTGTTGAATCCATCGGATGAGGATTTGAATTGGAATCGATCCTTGTGTCGAGCTATGGTGTCTGCTCCGGTT CAGTTCAAGGAAGAGAAGGAGTTGAATTCGTCGTCGATAAAGGATGTGGATTACAGGAAGCTGCTTAGAGATGGGTTTAGACTCAAGTGGGTTGGATTAG CCGGATACCACTGTGCTGACTGCCAAACAAGTGGAGGAAGGTGTGGGTTTGAAAACGGGAATAGCTCTTGTTACTGTCCTGATGGAACTTCCCATCCAAC TAACTGCTTTAACCGCGGTGGTCTAGGCATTGGAGTCCCAGCTACACTGATGATTTTGCTATTGGCCTGTGTTTATTGGCGTCACCGCAAAAGAAGCCTA ACTCCCTCAAGCTTTGCTTCATCCAGTGCCTATTTCAAAAAGTCTGCCAAGGGAGATGTACAACTAGAAGACGCAAATGCTTGTTTCGGCATTCCCATCT TCTCCTATAGTGAACTTGAACGGGCTACCAACCATTTTGATGCTGAAAGGGAACTAGGAGATGGAGGCTTTGGAACAGTGTACTATGGCAAACTCCGAGA TGGAAGGGAAGTTGCAGTTAAGCGGCTTTACGAGCACAACTACAAAAGAGTTGAGCAGTTCATGAATGAGGTAGAGATACTCACCCGCTTTCGCCACAAG AACCTTGTGGCACTCTATGGATGCACTTCACGCCATAGCAAGGAACTATTGCTCGTTTATGAGTTCATCGCCAACGGCACAGTGGCTGATCATCTCCATG GGGACAGAGCACTTTCATGTCCATTAATGTGGCCTGTAAGAATGAGCATTGCCATAGAAACAGCAAGTGCACTGTCTTACCTTCATGCTTCTGATATCAT ACACCGCGATGTCAAAACCACCAACATTCTATTGGACAGCAATTTCAGCGTCAAAGTAGCAGACTTCGGCCTCTCAAGGTTGTTCCCAAATGATGTAACC CATGTCTCCACTGCCCCGCAAGGAACTCTGGGCTACGTAGACCCCGATTACCACCGCTGTTACCAACTAACTAACAAGAGTGATGTCTACAGTTTCGGTG TTGTCCTCATTGAGCTTATATCATCCATGCCCGCTGTTGACATTTCCAGGAACAGAGATGAGATCAATCTAGCTAGCCTTGCAGTTGATAGGATTCAAAA CTGTGAATTTCAAGACTTGCTCGATCCTTGCATTGGGTACAATTCAGATGCAGAGGTCAAAAGAATGGCAATTCAAGTAGCGGTATTGGCTTTTCAGTGT CTGCAACAGGATAAAGAGATGAGACCCACCATGGATAAGGTTTTGGAGGATCTGAAGCAGATTAACGAAGGGAATAACAGTGATAAAGAGGAGGATCAAG ACATCCAAGCATTAAATATCACAACATTGTTATCTTCATCGCCACAATTAAATTCTGGTGACAGTACGCTTTTTAAGAAGCTCCCATCGTCGCCCATATC AGTAACGCAAAAGTGGGTTAGCAGTTGTTCAACTACTCCTAATATCAGTAGCTAA
AA sequence Show only first row Show all	>Lus10016737 pacid=23149084 polypeptide=Lus10016737 locus=Lus10016737.g ID=Lus10016737.BGIv1.0 annot-version=v1.0 MPPPRWRITVLSLFAAAITLMVSAALEEEPTSRYQSCNPKSCGTGPNITYPFYILRNKTDYCGLRGFGIRCQSGNPIYRTSAADYVIRDIAYENQTFLLV NQQFMSEQDASAAACPTPQQNYSFDRSSVEFSPFHADIYFFYGCNNASSSSFQVPGRASQLLPCNSSSSDNNKTYLVLNPSDEDLNWNRSLCRAMVSAPV QFKEEKELNSSSIKDVDYRKLLRDGFRLKWVGLAGYHCADCQTSGGRCGFENGNSSCYCPDGTSHPTNCFNRGGLGIGVPATLMILLLACVYWRHRKRSL TPSSFASSSAYFKKSAKGDVQLEDANACFGIPIFSYSELERATNHFDAERELGDGGFGTVYYGKLRDGREVAVKRLYEHNYKRVEQFMNEVEILTRFRHK NLVALYGCTSRHSKELLLVYEFIANGTVADHLHGDRALSCPLMWPVRMSIAIETASALSYLHASDIIHRDVKTTNILLDSNFSVKVADFGLSRLFPNDVT HVSTAPQGTLGYVDPDYHRCYQLTNKSDVYSFGVVLIELISSMPAVDISRNRDEINLASLAVDRIQNCEFQDLLDPCIGYNSDAEVKRMAIQVAVLAFQC LQQDKEMRPTMDKVLEDLKQINEGNNSDKEEDQDIQALNITTLLSSSPQLNSGDSTLFKKLPSSPISVTQKWVSSCSTTPNISS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18390			Protein kinase superfamily pro...		Lus10016737 [exp]	0	1
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10008439 [exp]	1.4	0.8084
AT3G05640			Protein phosphatase 2C family ...		Lus10016831 [exp]	6.0	0.7250
AT1G07350		SR45a	serine/arginine rich-like prot...		Lus10040705 [exp]	8.6	0.6718
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10029114 [exp]	9.0	0.7589
AT3G12320			unknown protein		Lus10024129 [exp]	12.6	0.7182
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10035874 [exp]	12.9	0.7694
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10036392 [exp]	19.8	0.7207
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10032655 [exp]	25.3	0.7017
AT3G12320			unknown protein		Lus10005384 [exp]	28.4	0.6731
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10043097 [exp]	30.3	0.7184

Compare expression of checked genes

Lus10016737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.