Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00650 192 / 2e-56 FLA, FRI FLOWERING LOCUS A, FRIGIDA-like protein (.1) AT5G48385 86 / 2e-17 FRIGIDA-like protein (.1) AT3G22440 81 / 8e-16 FRIGIDA-like protein (.1) AT4G14900 65 / 7e-11 FRIGIDA-like protein (.1) AT5G16320 61 / 9e-10 FRL1 FRIGIDA like 1 (.1) AT1G31814 59 / 3e-09 FRL2 FRIGIDA like 2 (.1) AT5G27230 50 / 6e-06 Frigida-like protein (.1) AT5G27220 47 / 5e-05 Frigida-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022433 [exp] 991 / 0 AT4G00650 202 / 7e-60 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Lus10043012 [exp] 473 / 3e-161 AT4G00650 176 / 5e-50 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Lus10032514 [exp] 476 / 2e-152 AT5G51070 1280 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10008744 [exp] 90 / 1e-18 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Lus10002146 [exp] 89 / 2e-18 AT5G48385 640 / 0.0 FRIGIDA-like protein (.1) Lus10042965 [exp] 86 / 2e-17 AT1G31814 237 / 8e-72 FRIGIDA like 2 (.1) Lus10032466 [exp] 82 / 2e-16 AT1G31814 227 / 6e-68 FRIGIDA like 2 (.1) Lus10010560 [exp] 72 / 6e-13 AT3G22440 714 / 0.0 FRIGIDA-like protein (.1) Lus10006113 [exp] 72 / 6e-13 AT3G22440 686 / 0.0 FRIGIDA-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G110066 [exp] 210 / 4e-63 AT4G00650 140 / 5e-39 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Potri.002G206200 [exp] 115 / 5e-27 AT5G16320 220 / 1e-65 FRIGIDA like 1 (.1) Potri.015G110132 [exp] 108 / 2e-25 AT5G48385 54 / 8e-08 FRIGIDA-like protein (.1) Potri.014G175200 [exp] 102 / 9e-23 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Potri.002G239900 [exp] 98 / 3e-21 AT5G48385 655 / 0.0 FRIGIDA-like protein (.1) Potri.008G153000 [exp] 88 / 3e-18 AT3G22440 710 / 0.0 FRIGIDA-like protein (.1) Potri.007G050800 [exp] 81 / 1e-15 AT5G48385 296 / 6e-93 FRIGIDA-like protein (.1) Potri.005G043900 [exp] 56 / 6e-08 AT5G27230 119 / 3e-27 Frigida-like protein (.1) Potri.005G044000 [exp] 52 / 7e-07 AT5G27230 125 / 2e-29 Frigida-like protein (.1) Potri.005G044100 [exp] 50 / 2e-06 AT5G27230 116 / 1e-26 Frigida-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [flax] [poplar] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Lus10016738 pacid=23149114 polypeptide=Lus10016738 locus=Lus10016738.g ID=Lus10016738.BGIv1.0 annot-version=v1.0 ATGGCGAAACCTCTGGTTTCTAATGCCGGCTCTCCTCTACAATCAATCGCTGTCCAGGTGAAGCTGGAAAGCATTACAGAATCACAGCTTCAGCTCCAAT CTCAACCGCCGATGACCCATGTCAATTCCGAGCCACCCAAGGTTAATGAACTTCCTCACAGGTCCCCGACGTTTGAATCAGTAAACAGATTGTGCAATCT GTCGACTGCCATTCAAGAATTCAAGCGCAGGTACGATGAATTGGAAAAGCTTATCGATTCCATCCGGTCTTCTGTGGAGATTCAGGAACAGCTGGCAGCT ACGGATGTGGCAGTTCCGTCCAAGTCCGAGTTAGACAGTATTTGCGAGACGATGTGCGCCAGAAGTCTACGTAAGTATATTACTTCTCACCTCGACGAGG CTCAGAAGCTTCGTGAAGAAGTCCCTTTGGCGCTAAAGACAGCTCCACATCCGGCCAAGCTTGTGCTGGATTGCATTGGACGGTTTTATCTTCAAGGAAG CAGAGCTTTTTCCAAGGATTCCCCAATGATATCAGCAAGAGAAGCTTCCATTCTAGCTCTAGAATTGCTCCTCATGACGATTGAGGATGGTGAAGTTCAA CTTGATGACCTAGATAGACAAGAGACGGTTCTAGCTGCATTGAATTGGAGAAAGAGGCTTGTACTAGAGGGTGGTATTCGTAAAGCTAGCGAAATCGATG CCAAGGGTTTGCTTCTATTCCTCGCGTGTTATGGAATTCCAAAGCCGTTTAAGAATGAGGATATTTGGGATTTAGTTATTGCTGGTAATGCTGGGCAGGT TGCCAATGCTCTCAAACGCTCCACTTCTCTTGTATCCAGAGTTGAAGATATCATACAAGAAGCTGTGAGCAGCGGACTGAAACAAAATGCCAAACTTGAG GCTGTGGACGTGGCATCTAAATTTGGGATCAATGACAAGTTTCCGGCTCAGATGCTTCTGACTGCATTCCTTGAGGAGTCCAAAGAGACGCTTAAAAGGA GAATAAGAGAAGCAAATAATTCGCCTACGCAGCTGAAACAAGCAAATGCGTGCCATTTGACTGCTCTGAAATCGGTGATGAACTTGCTCAACGAGTGTAA CCTGGATTCGTTGAAGGTAGTTCCTGGATGGAAATTTGCAGAGGAAATAGCCATGTTGGAGAAAGAAAATGCTGATTTAAGCAGAACCATTTTAGAAAAG GTGAGGATGAAGACGAAAGCTGATGAGAATGACTACTTAGATAAGAGCAATCCAGCAATCAAACGTCCGCGAGTTAGTGGTCAAATCTCTAATCTAATGT CTTCCCCAAGCGTTGGGTTATATGAACAAAATGCTGCAGGCGGAGGTTGTCTAACGCGTGATGCTAGTGTCAATTTTCAGGGCGGCCCAACTACAGGTGG TTTGGCTGGAAGCTTAACTACTAGTAGCCTTGGCTGGGAGGGCGTAGTCGATAAGCCTGGTAAAAACAATGGATGGATTGGTAAAGCAGTAGCGGGACAG AGCTACGTCAGGAGCCGTGCGTATGGATTGTTTGGACCTTCGCCGTTGATGGAAGGCTTTCCTGGATTGTCGAATTCCCCGCCACCTGTCGTAGGTGCAA CCATAAACGCAGCAGAATTGTTTCGATTTGCAGATACTGTAGTAGAAAGCGATTATAATGGCGGGGTTGGAGAGTACCATTAG
AA sequence Show only first row Show all	>Lus10016738 pacid=23149114 polypeptide=Lus10016738 locus=Lus10016738.g ID=Lus10016738.BGIv1.0 annot-version=v1.0 MAKPLVSNAGSPLQSIAVQVKLESITESQLQLQSQPPMTHVNSEPPKVNELPHRSPTFESVNRLCNLSTAIQEFKRRYDELEKLIDSIRSSVEIQEQLAA TDVAVPSKSELDSICETMCARSLRKYITSHLDEAQKLREEVPLALKTAPHPAKLVLDCIGRFYLQGSRAFSKDSPMISAREASILALELLLMTIEDGEVQ LDDLDRQETVLAALNWRKRLVLEGGIRKASEIDAKGLLLFLACYGIPKPFKNEDIWDLVIAGNAGQVANALKRSTSLVSRVEDIIQEAVSSGLKQNAKLE AVDVASKFGINDKFPAQMLLTAFLEESKETLKRRIREANNSPTQLKQANACHLTALKSVMNLLNECNLDSLKVVPGWKFAEEIAMLEKENADLSRTILEK VRMKTKADENDYLDKSNPAIKRPRVSGQISNLMSSPSVGLYEQNAAGGGCLTRDASVNFQGGPTTGGLAGSLTTSSLGWEGVVDKPGKNNGWIGKAVAGQ SYVRSRAYGLFGPSPLMEGFPGLSNSPPPVVGATINAAELFRFADTVVESDYNGGVGEYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10016738 [exp]	0	1
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Lus10013191 [exp]	7.3	0.8135
AT3G27030			unknown protein		Lus10032030 [exp]	7.7	0.7852
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013467 [exp]	7.7	0.7984
AT5G21040		FBX2	F-box protein 2 (.1.2)		Lus10026770 [exp]	10.5	0.7582
AT4G09670			Oxidoreductase family protein ...		Lus10001327 [exp]	13.0	0.7979
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Lus10030705 [exp]	13.7	0.7897
					Lus10011573 [exp]	15.2	0.7887
AT1G04570			Major facilitator superfamily ...		Lus10023708 [exp]	20.0	0.7549
AT2G37110			PLAC8 family protein (.1)		Lus10015072 [exp]	26.1	0.7624
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Lus10007870 [exp]	28.7	0.7820

Compare expression of checked genes

Lus10016738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.