Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51060 567 / 0 ATRBOHC, RHD2 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) AT5G47910 546 / 0 ATRBOHD, RBOHD respiratory burst oxidase homologue D (.1) AT5G07390 526 / 0 ATRBOHA respiratory burst oxidase homolog A (.1.2) AT4G25090 494 / 7e-170 Riboflavin synthase-like superfamily protein (.1.2) AT1G09090 487 / 5e-167 ATRBOHB-BETA, ATRBOHB respiratory burst oxidase homolog B (.1.2) AT1G64060 473 / 2e-160 RBOHAP108, ATRBOHF ,ATRBOH F ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) AT4G11230 421 / 1e-140 Riboflavin synthase-like superfamily protein (.1) AT5G60010 403 / 4e-134 ferric reductase-like transmembrane component family protein (.1) AT1G19230 395 / 2e-130 Riboflavin synthase-like superfamily protein (.1.2) AT3G45810 374 / 1e-122 ferric reductase-like transmembrane component family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022434 [exp] 710 / 0 AT5G51060 1276 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Lus10043017 [exp] 633 / 0 AT5G47910 1276 / 0.0 respiratory burst oxidase homologue D (.1) Lus10032517 [exp] 629 / 0 AT5G47910 1273 / 0.0 respiratory burst oxidase homologue D (.1) Lus10020644 [exp] 504 / 2e-175 AT1G09090 1085 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10029896 [exp] 499 / 2e-171 AT1G09090 1158 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10024683 [exp] 474 / 2e-161 AT5G60010 742 / 0.0 ferric reductase-like transmembrane component family protein (.1) Lus10032308 [exp] 474 / 9e-161 AT1G64060 1467 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10017527 [exp] 465 / 4e-158 AT1G64060 1445 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10028755 [exp] 429 / 1e-143 AT1G64060 1486 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G111600 [exp] 609 / 0 AT5G51060 1255 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.015G109800 [exp] 595 / 0 AT5G51060 1253 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.003G159800 [exp] 585 / 0 AT5G47910 1299 / 0.0 respiratory burst oxidase homologue D (.1) Potri.001G070900 [exp] 569 / 0 AT5G47910 1227 / 0.0 respiratory burst oxidase homologue D (.1) Potri.005G026200 [exp] 523 / 2e-180 AT1G09090 1165 / 0.0 respiratory burst oxidase homolog B (.1.2) Potri.003G133300 [exp] 479 / 6e-163 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.001G098300 [exp] 473 / 2e-160 AT1G64060 1476 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.006G137300 [exp] 410 / 3e-136 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Potri.006G097200 [exp] 377 / 2e-124 AT5G60010 1078 / 0.0 ferric reductase-like transmembrane component family protein (.1) Potri.016G112200 [exp] 373 / 8e-123 AT5G60010 1052 / 0.0 ferric reductase-like transmembrane component family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF08022 [flax] [poplar] FAD_binding_8 FAD-binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF08030 [flax] [poplar] NAD_binding_6 Ferric reductase NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10016739 pacid=23149087 polypeptide=Lus10016739 locus=Lus10016739.g ID=Lus10016739.BGIv1.0 annot-version=v1.0 ATGTACTTGGCTGTTCCAGTCGTTCTTTATGGCAGCGAGAGGTTGACAAGGGCATTGAGGTCCAGCATCAAGGCAGTTACCATAAGGAAGGTGGCAATTT ATCCTGGAAACGTGTTGGCACTTCACATGTCAAAGCCTAGTGGGTTCAGATACAAGAGTGGGCAGTACATGTTTGTGAATTGTGCTGCAGTGTCTCCATT TGAATGGCACCCATTCTCCATCACTTCTGCTCCCGGAGACGATTATTTGAGCGTTCACATTAGAACACTGGGTGACTGGACGAGGCAGCTCAGAACTGTT TTCCAAGAGGTGTGTCAACCACCGGCGACAGGGAAGAGTGGACTTCTCAGGGCGGATGGATTTCAGGGAAACAACAATCCTGATTTCCCAAAAATATTGA TCGACGGACCATATGGAGCTCCGGCACAAGACTACAAACAATACGAAGTGGTTCTGCTAGTGGGACTCGGGATAGGAGCCACACCCATGATCAGCATTGT CAAGGACATAGTAAACAACATGAAGGCCATGGATGACTTGGAGAACGGCGCAACAACTACTGCACCCAGCGCCGGGTCGCCGCCGTCTATAAGCCAGTAC TCCAACAGTAAGAGGAAAGAACAGTTCAGGACGAGAAGGGCCTACTTTTACTGGGTAACAAGGGAGCAAGGCTCCTTCGACTGGTTTAAAGGTGTGATGA ACGAGGTTGCTGAACTGGATCAAAACCAAGTGATCGAGCTCCATAACTACTGCACCAGTGTGTACGAAGAGGGAGATGCACGTTCTGCACTCATTGCCAT GCTCCAATCCCTTCACCACGCTAAAAACGGGGTTGACATTGTCTCGGGGACACGTGTCAAGTCCCACTTCGCTAAACCCAACTGGCGTAACGTTTTCAAG CAAGTTGCCGTTCACCATCCTCATTCTCGAGTTGGGGTGTTTTATTGTGGGGCACCTGGATTGACGAAGGAGCTCCGCAACTTGGCTCTGGATTTCTCGC ATAAGACCACCACCAAGTTTGATTTCCACAAGGAGAACTTCTAA
AA sequence Show only first row Show all	>Lus10016739 pacid=23149087 polypeptide=Lus10016739 locus=Lus10016739.g ID=Lus10016739.BGIv1.0 annot-version=v1.0 MYLAVPVVLYGSERLTRALRSSIKAVTIRKVAIYPGNVLALHMSKPSGFRYKSGQYMFVNCAAVSPFEWHPFSITSAPGDDYLSVHIRTLGDWTRQLRTV FQEVCQPPATGKSGLLRADGFQGNNNPDFPKILIDGPYGAPAQDYKQYEVVLLVGLGIGATPMISIVKDIVNNMKAMDDLENGATTTAPSAGSPPSISQY SNSKRKEQFRTRRAYFYWVTREQGSFDWFKGVMNEVAELDQNQVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGVDIVSGTRVKSHFAKPNWRNVFK QVAVHHPHSRVGVFYCGAPGLTKELRNLALDFSHKTTTKFDFHKENF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Lus10016739 [exp]	0	1
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10023073 [exp]	1.0	0.8628
AT5G38900			Thioredoxin superfamily protei...		Lus10005083 [exp]	2.0	0.8581
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10016740 [exp]	2.4	0.8414
AT4G29210		GGT4, GGT3	gamma-glutamyl transpeptidase ...		Lus10035003 [exp]	4.2	0.7911
AT4G39140			RING/U-box superfamily protein...		Lus10017978 [exp]	4.5	0.8328
AT4G39140			RING/U-box superfamily protein...		Lus10041970 [exp]	4.9	0.8140
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10019543 [exp]	5.3	0.8054
AT3G22750			Protein kinase superfamily pro...		Lus10042622 [exp]	5.9	0.8328
AT1G79710			Major facilitator superfamily ...		Lus10024099 [exp]	13.9	0.7646
AT2G13100		AtG3Pp5	glycerol-3-phosphate permease ...		Lus10040002 [exp]	14.4	0.7991

Compare expression of checked genes

Lus10016739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.